SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27340.1 | AT | Met-10+ like family protein | JGI | N/A | IEA |
| GO:0006479 | GO-bp | protein methylation | JGI | N/A | IEA |
| GO:0008033 | GO-bp | tRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0008033 | GO-bp | tRNA processing | JGI | N/A | IEA |
| GO:0030488 | GO-bp | tRNA methylation | EnsemblGenomes | N/A | IEA |
| GO:0032259 | GO-bp | methylation | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005759 | GO-cc | mitochondrial matrix | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | JGI | N/A | IEA |
| GO:0004809 | GO-mf | tRNA (guanine-N2-)-methyltransferase activity | JGI | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008276 | GO-mf | protein methyltransferase activity | JGI | N/A | IEA |
| GO:0009019 | GO-mf | tRNA (guanine-N1-)-methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | JGI | N/A | IEA |
| GO:0052906 | GO-mf | tRNA (guanine(37)-N(1))-methyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG2078 | KOG | tRNA modification enzyme | JGI | N/A | IEA |
| PTHR23245 | Panther | UNCHARACTERIZED | JGI | N/A | IEA |
| PTHR23245:SF25 | Panther | TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE | JGI | N/A | IEA |
| PF02475 | PFAM | Met-10+ like-protein | JGI | N/A | IEA |
|
Glyma.13g282700 not represented in the dataset |
Glyma.13g282700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g217900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g35870 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g282700.1 sequence-type=CDS polypeptide=Glyma.13g282700.1.p locus=Glyma.13g282700 ID=Glyma.13g282700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATAAGCAAGGTATTCCTAAAGCCCCATCTGGTTGGTCTTCTTCTTCCCTCTAAATTCGGCTTGGTCTTCCCTCACACAACCAAGCCTTCTTCTTCCCTTCCCACCACTTTCTTCATTTCACACTTCTCCTCTGCCCCTCTCTCTTCCTACGGACCCTCCCTCCACAAGGGAACAACAATCCCCTCCCAATCCCTAAACGACGCCGTTCTCTGCGAAGAAGCCTTCACGCGAGTCTTCCACCTCGCCGCACTCCGCGTCCCCTCCTCCGAATGCTCCGCCCTCGAGAGCCGCCTCCGTGGCCACCTCCTTAACTGGCCCCGCCTCCGCAATATCGCCCGCGTCCCCGGCGACGACATCGACCCCACCCTCGCCCCTCTCTTGCCTCAACCAGGTAACGGAGAATTCGACTTCGACGAAAATGAAGTAGAAGAAAGACGTCTCGTCTCGCTGCAACGCCGGATTCACGGCAAGGCGGACGGCGACGGCGACGTGTTGAGCCCCGTGCTGTACCGTGACAGGCTCGCGAGGACGTTCAACACCAGCGGCTTCGTGAAGTTCCGCCACCTCGCGAAGATTTCGCGGCCGAACAGGAATAAGAGGAGGAGGAAGAGGAAGGAGAAGGAGTCGAGTGAAGGGGTTAAGCGCGTGGGGGAGAATGGGTTTGCTGCAGTTGAGGTTATTGAGGAAGAAGAAGAAGGAGAAGAAAGTGGTGGTTTGAGGAATTTGCTTGGAGAAGAGTTTGCGAGGAAAAAATGGAGAGGTTCCACGAGGTTGCTGCTTCTGGATGAACGCTACGCCGATCGCGGTTTCGAGGAGTTGCCTGAGGCAACTAAGGCTGTTTTGAAGGAGTATGCAGAAAAGAGTACAAATTTGATGCTTGAGCTAGTTAGATGCAAGTTGACACTATTCTATGATTACTGGCAGATGAATGAGGTCTTGGAGACCTTGCTGCCTGAGGGTATGATTATTCCTTCCGCTTTTGAGACTGTTGGTCATATAGCACACCTGAATTTGAGAGACGAACATTTACCATACAAGTGGCTAATAGCTAAGGTTGTGCTGGATAAGAATAAGCCAAGGATACAAACGGTTGTGAACAAGATTGATACAATTCAAAATGAGTACAGGACCATGCAGCTTGAGGTTTTAGCAGGAAACCACTCTCTTGTGACTACAGTAGTTGAGAATGGTATTCACTTTCAGGTTGACTTAGCGACAGTATATTGGAGTTCTAGGCTAGGAACTGAAAGACAAAGGCTTCTGAGTGGTTTTACACGGAACGATGTCGTCTGTGATGTTTTCTCTGGAGTTGGTCCTTTAGCCATATCTGCAGCAAGGATAGTTAAACGTGTTTTTGCTAATGACTTAAATCCTTATGCAGTTGAGTATCTGGAAAGAAATTGTGTTCTAAACAAACTTGACAGGAAGATTAAGGTCTTTAACATGGATGGAAGAAGGTTCATTAAATCTATGTATGACAGTGATATATCTCAGTCCATCACACAGGTGGTTATGAACTTGCCAAGTGAAGCTGCAGAATTTCTAGATGCATTTCGGGGAATATACAAAAATAGACCCAAGGATGGGGAATATACTTTGCCATTGATCCATGTTTATGGATTCTCCAAAGCACGAGATCCAGAATTTGATTTTCACGAGAGAATAAGAATTGCACTGCTAGAAGTTGCAGTCAATGTAGACATGAGACGGGTAAGGCTTGTTGCTCCTGGAAAATGGATGTTGTGCGCATCGTTCCTTCTCCCTAAAAGTGTAGCATTTGCTGATACTGCAGTTGATACCTAA
>Glyma.13g282700.1.p sequence-type=predicted peptide transcript=Glyma.13g282700.1 locus=Glyma.13g282700 ID=Glyma.13g282700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MISKVFLKPHLVGLLLPSKFGLVFPHTTKPSSSLPTTFFISHFSSAPLSSYGPSLHKGTTIPSQSLNDAVLCEEAFTRVFHLAALRVPSSECSALESRLRGHLLNWPRLRNIARVPGDDIDPTLAPLLPQPGNGEFDFDENEVEERRLVSLQRRIHGKADGDGDVLSPVLYRDRLARTFNTSGFVKFRHLAKISRPNRNKRRRKRKEKESSEGVKRVGENGFAAVEVIEEEEEGEESGGLRNLLGEEFARKKWRGSTRLLLLDERYADRGFEELPEATKAVLKEYAEKSTNLMLELVRCKLTLFYDYWQMNEVLETLLPEGMIIPSAFETVGHIAHLNLRDEHLPYKWLIAKVVLDKNKPRIQTVVNKIDTIQNEYRTMQLEVLAGNHSLVTTVVENGIHFQVDLATVYWSSRLGTERQRLLSGFTRNDVVCDVFSGVGPLAISAARIVKRVFANDLNPYAVEYLERNCVLNKLDRKIKVFNMDGRRFIKSMYDSDISQSITQVVMNLPSEAAEFLDAFRGIYKNRPKDGEYTLPLIHVYGFSKARDPEFDFHERIRIALLEVAVNVDMRRVRLVAPGKWMLCASFLLPKSVAFADTAVDT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
