SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.13g277200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.13g277200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.13g277200

Feature Type:gene_model
Chromosome:Gm13
Start:37860012
stop:37865239
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g277200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59440.3AT P-loop containing nucleoside triphosphate hydrolases superfamily protein JGI N/AIEA
GO:0006227GO-bp dUDP biosynthetic process EnsemblGenomesN/AIEA
GO:0006233GO-bp dTDP biosynthetic process EnsemblGenomesN/AIEA
GO:0006235GO-bp dTTP biosynthetic process EnsemblGenomesN/AIEA
GO:0046939GO-bp nucleotide phosphorylation EnsemblGenomesN/AIEA
GO:0046940GO-bp nucleoside monophosphate phosphorylation EnsemblGenomesN/AIEA
GO:0005654GO-cc nucleoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004798GO-mf thymidylate kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0009041GO-mf uridylate kinase activity EnsemblGenomesN/AIEA
KOG3327 KOG Thymidylate kinase/adenylate kinase JGI N/AIEA
PTHR10344Panther THYMIDYLATE KINASE JGI N/AIEA
PF02223PFAM Thymidylate kinase JGI N/AIEA
PWY-7184SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-7187SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis II Plant Metabolic Network ISS
PWY-7197SoyCyc9 pyrimidine deoxyribonucleotide phosphorylation Plant Metabolic Network ISS
PWY-7211SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY0-166SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) Plant Metabolic Network ISS
GN7V-67420SoyCyc9-rxn dTMP kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g277200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g277200 not represented in the dataset
Glyma.13g277200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g277200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g35236 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g277200
>Glyma.13g277200.2 sequence-type=transcript locus=Glyma.13g277200 ID=Glyma.13g277200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAGTCTGGCTTGCAATGTGATATTGCAGTATTGGGCTGAAACATAAGTGAGGCCGTGACAAAAAGAGAAGCCCACATGACATGCTTCTGTTGTGTAGTTGTAGCTTGAGGGTTTTTTCGATTGAAGCATTACACCACTCCACTTTAGTCTCTCCTACTTGCCACAACCCCTATTGAGGGTTTTTAGGACGCGTAAAAGTGATGCCACGTGCCCTAATTCAGGACATTAAACCATAGCTAGCGTCTCCTTGCGAAAAATGACCATAAGCTTACAGTTTAAGGGCTTTGTGAGGATATGATCTATGGCACTTGTGTCACAGCTTCCAAGTCACTGATTTTCAGAGCGTTAGTGTTGCAGAAGCCATTAAATTTTCAAGTAAAATTCTCCTCCAAGTGTTTTCCTACGAAGATAAGAATGGAAAGTAATCTTAATCATAGCATAGAGGGCAACAATAAAGCGTCTAGGGGTGCCTTGGTTGTCCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTAGCAGGCTAGTGTCCTTCTTGGAGGGACAAGGGATCTCTGCTGAATTATGGAGATTTCCCGACAGAACTACAAATGTTGGGCAAATGATATCTGCCTATCTAACTAACACATCTCAGTTGGATGATCATACTATTCATCTCCTCTTCAGCGCTAATCGTTGGGAAAAGAGGTCATTGATGGAATCAAAACTGAAAACTGGAACAACCCTCATTGTTGACCGTTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAGGGACTTGATTTTGAATGGTGTAAGGTCCCAGAGATTGGATTGCCAGCACCAGATGTGGTAGTATACCTTGACATATCTCCAGAGAAAGCTGCAGAAAGAGGAGGGTATGGAGGTGAGAGATATGAAAAGCTGGAGTTTCAGAAGAAAGTTGCTGATTGGTACAAAGTTCTTCATGATGTTTCCTGGAAGGATGTTGATGCTTGCCAACCCATAGAAGATGTGGAGAAACAGTTGCAAGAGATTGTTCTTGATTGTGTCACAGAATGCCGGAAGGGGAAGCCCCTTTCCACCTTGTGGTCGAAGTAGACACGCCTTGATACATGAGAACAAATATGTCAGATGTATTATTTTGAACACCAAAACCCATTTTTGTGTAACTCTGGTTGCTCTTTTTTTATATCTTATAATCACAAATTAATTCGTTTGCGAAGCAATTTGAAGAAAGCCTCGAAATTTATAATATGCCCAAGCTCAAGCTGGAAGGATTGAAAATTTTCTGATCCAACAAATGTGATGCAGCAGCTTTCTGTAACCCTGATGAGGTCCAGATTTTATGTGCCCAATTTCACTGAAGTTTAACTATACATCAGGACTGCCTCAAAAGTGTTTAATGCTTGTGAAACTAGTAGGAAAGTATTTTGGGAAAAGCCAAATTGATACGAGTTTATTTATCTATTAATATGTTACCTAGTTATTGGCAATTGGATAGCCTTTAAATGAATTCTATTGCCTCAAGTGTTT
Coding sequences of Glyma.13g277200
>Glyma.13g277200.1 sequence-type=CDS polypeptide=Glyma.13g277200.1.p locus=Glyma.13g277200 ID=Glyma.13g277200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCTATGGCACTTGTGTCACAGCTTCCAAGTCACTGATTTTCAGAGCGTTAGTGTTGCAGAAGCCATTAAATTTTCAAGTAAAATTCTCCTCCAAGTGTTTTCCTACGAAGATAAGAATGGAAAGTAATCTTAATCATAGCATAGAGGGCAACAATAAAGCGTCTAGGGGTGCCTTGGTTGTCCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTAGCAGGCTAGTGTCCTTCTTGGAGGGACAAGGGATCTCTGCTGAATTATGGAGATTTCCCGACAGAACTACAAATGTTGGGCAAATGATATCTGCCTATCTAACTAACACATCTCAGTTGGATGATCATACTATTCATCTCCTCTTCAGCGCTAATCGTTGGGAAAAGAGGTCATTGATGGAATCAAAACTGAAAACTGGAACAACCCTCATTGTTGACCGTTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAGGGACTTGATTTTGAATGGTGTAAGGTCCCAGAGATTGGATTGCCAGCACCAGATGTGGTAGTATACCTTGACATATCTCCAGAGAAAGCTGCAGAAAGAGGAGGGTATGGAGGTGAGAGATATGAAAAGCTGGAGTTTCAGAAGAAAGTTGCTGATTGGTACAAAGTTCTTCATGATGTTTCCTGGAAGGATGTTGATGCTTGCCAACCCATAGAAGATGTGGAGAAACAGTTGCAAGAGATTGTTCTTGATTGTGTCACAGAATGCCGGAAGGGGAAGCCCCTTTCCACCTTGTGGTCGAAGTAG

>Glyma.13g277200.2 sequence-type=CDS polypeptide=Glyma.13g277200.2.p locus=Glyma.13g277200 ID=Glyma.13g277200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCTATGGCACTTGTGTCACAGCTTCCAAGTCACTGATTTTCAGAGCGTTAGTGTTGCAGAAGCCATTAAATTTTCAAGTAAAATTCTCCTCCAAGTGTTTTCCTACGAAGATAAGAATGGAAAGTAATCTTAATCATAGCATAGAGGGCAACAATAAAGCGTCTAGGGGTGCCTTGGTTGTCCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTAGCAGGCTAGTGTCCTTCTTGGAGGGACAAGGGATCTCTGCTGAATTATGGAGATTTCCCGACAGAACTACAAATGTTGGGCAAATGATATCTGCCTATCTAACTAACACATCTCAGTTGGATGATCATACTATTCATCTCCTCTTCAGCGCTAATCGTTGGGAAAAGAGGTCATTGATGGAATCAAAACTGAAAACTGGAACAACCCTCATTGTTGACCGTTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAGGGACTTGATTTTGAATGGTGTAAGGTCCCAGAGATTGGATTGCCAGCACCAGATGTGGTAGTATACCTTGACATATCTCCAGAGAAAGCTGCAGAAAGAGGAGGGTATGGAGGTGAGAGATATGAAAAGCTGGAGTTTCAGAAGAAAGTTGCTGATTGGTACAAAGTTCTTCATGATGTTTCCTGGAAGGATGTTGATGCTTGCCAACCCATAGAAGATGTGGAGAAACAGTTGCAAGAGATTGTTCTTGATTGTGTCACAGAATGCCGGAAGGGGAAGCCCCTTTCCACCTTGTGGTCGAAGTAG
Predicted protein sequences of Glyma.13g277200
>Glyma.13g277200.1.p sequence-type=predicted peptide transcript=Glyma.13g277200.1 locus=Glyma.13g277200 ID=Glyma.13g277200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIYGTCVTASKSLIFRALVLQKPLNFQVKFSSKCFPTKIRMESNLNHSIEGNNKASRGALVVLEGLDRSGKSSQCSRLVSFLEGQGISAELWRFPDRTTNVGQMISAYLTNTSQLDDHTIHLLFSANRWEKRSLMESKLKTGTTLIVDRYSYSGVAFSSAKGLDFEWCKVPEIGLPAPDVVVYLDISPEKAAERGGYGGERYEKLEFQKKVADWYKVLHDVSWKDVDACQPIEDVEKQLQEIVLDCVTECRKGKPLSTLWSK*

>Glyma.13g277200.2.p sequence-type=predicted peptide transcript=Glyma.13g277200.2 locus=Glyma.13g277200 ID=Glyma.13g277200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIYGTCVTASKSLIFRALVLQKPLNFQVKFSSKCFPTKIRMESNLNHSIEGNNKASRGALVVLEGLDRSGKSSQCSRLVSFLEGQGISAELWRFPDRTTNVGQMISAYLTNTSQLDDHTIHLLFSANRWEKRSLMESKLKTGTTLIVDRYSYSGVAFSSAKGLDFEWCKVPEIGLPAPDVVVYLDISPEKAAERGGYGGERYEKLEFQKKVADWYKVLHDVSWKDVDACQPIEDVEKQLQEIVLDCVTECRKGKPLSTLWSK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo