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Report for Sequence Feature Glyma.13g273500

Feature Type:gene_model
Chromosome:Gm13
Start:37522431
stop:37526697
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g273500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15150.1AT RING/U-box superfamily protein JGI N/AIEA
GO:0000724GO-bp double-strand break repair via homologous recombination EnsemblGenomesN/AIEA
GO:0008284GO-bp positive regulation of cell proliferation EnsemblGenomesN/AIEA
GO:0010082GO-bp regulation of root meristem growth EnsemblGenomesN/AIEA
GO:0016925GO-bp protein sumoylation EnsemblGenomesN/AIEA
GO:0032876GO-bp negative regulation of DNA endoreduplication EnsemblGenomesN/AIEA
GO:0045931GO-bp positive regulation of mitotic cell cycle EnsemblGenomesN/AIEA
GO:0060250GO-bp germ-line stem-cell niche homeostasis EnsemblGenomesN/AIEA
GO:0080038GO-bp positive regulation of cytokinin-activated signaling pathway EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0030915GO-cc Smc5-Smc6 complex EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0019789GO-mf SUMO transferase activity EnsemblGenomesN/AIEA
PTHR21330Panther UNCHARACTERIZED JGI N/AIEA
PTHR21330:SF1Panther E3 SUMO-PROTEIN LIGASE NSE2 JGI N/AIEA
PF11789PFAM Zinc-finger of the MIZ type in Nse subunit JGI N/AIEA

Expression Patterns of Glyma.13g273500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g273500 not represented in the dataset
Glyma.13g273500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g273500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g34860 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g273500
>Glyma.13g273500.2 sequence-type=transcript locus=Glyma.13g273500 ID=Glyma.13g273500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCATGACCTCAAAGGACAAAATTATGTGTTTGGCGAACTTGAATTTATTGGCTTGTGTGGCTTTCTCCCTCCAAAAAACTCCCCTCTTTTCCGTCGGAGAATGGCGTCATCTTCACAAAGCCGCTGTGGCAGCGGCAGCGCCGCCTCACGACTGAGGAACGCAGCTTCCACCTTCTGCTCCGACTCACAGCCTCTCCTTGCCGATATCCGAAAAACCGTGCTTATGATGAAGGACATCGCAGTTCAATTGGAGAAAGACAACCTCCCTGACAAGGCGAAGGAACTGGAAGATGCGGTTATTGAGTTAGTAGGGCTATCTGAGCTCAGTGTGCAATTTTCATCAGCGGTTCAAGCTTTTGCTAACGCATACCAGCCTAAGGAAGAGTTCACTAATTTTAATACGTTGTTTGAGGATGAGCTTTCCAGGTTTAAGGCCAACCAATCTTCAGATGTTCCTAAAAATCCTGTAGTACGCCAATTTAAGGAAGCTGTGTGGAATGTTCATCATGCGGGGCAGCCAATGCCAGGCGAAGAGCAGGAGGATATTGTAATGACCAGTATCCAGTCCAACATTTTGAATATTACCTGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGGGATGTGAATGGGTTGGCTTGGTTGAAGGCTGAAGACACATGCAAATCAATGAGAAAGATGCCTGTATCTGTCTTGTAATCCATTTGGCTGTGTTTTTCTCAGCTGTGGCCTGAGCCAAAATAAATTATTTATATATTATAAAAAGAAAAACAATAATTTATCATTGTTATTTTTGTATTT
Coding sequences of Glyma.13g273500
>Glyma.13g273500.1 sequence-type=CDS polypeptide=Glyma.13g273500.1.p locus=Glyma.13g273500 ID=Glyma.13g273500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCATCTTCACAAAGCCGCTGTGGCAGCGGCAGCGCCGCCTCACGACTGAGGAACGCAGCTTCCACCTTCTGCTCCGACTCACAGCCTCTCCTTGCCGATATCCGAAAAACCGTGCTTATGATGAAGGACATCGCAGTTCAATTGGAGAAAGACAACCTCCCTGACAAGGCGAAGGAACTGGAAGATGCGGTTATTGAGTTAGTAGGGCTATCTGAGCTCAGTGTGCAATTTTCATCAGCGGTTCAAGCTTTTGCTAACGCATACCAGCCTAAGGAAGAGTTCACTAATTTTAATACGTTGTTTGAGGATGAGCTTTCCAGGTTTAAGGCCAACCAATCTTCAGATGTTCCTAAAAATCCTGTAGTACGCCAATTTAAGGAAGCTGTGTGGAATGTTCATCATGCGGGGCAGCCAATGCCAGGCGAAGAGCAGGAGGATATTGTAATGACCAGTATCCAGTCCAACATTTTGAATATTACCTGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGCATGGAGTGCAGGCACATTTATGAAAAGAAAGTAATAATGCAATATTTGAAGTCAAAGCAACATCAATGCCCAATTTCAGGTTGCCCAAAGATATTGCAGGCAGATAAGCTGGTGCAAGATCCGTTGTTAATGATTGAGATTGAGGAAATGCGCAAAATGAATAGAGAAACTGACGTAGAAGATTATACCATGCTTAATGAAGATTAG

>Glyma.13g273500.2 sequence-type=CDS polypeptide=Glyma.13g273500.2.p locus=Glyma.13g273500 ID=Glyma.13g273500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCATCTTCACAAAGCCGCTGTGGCAGCGGCAGCGCCGCCTCACGACTGAGGAACGCAGCTTCCACCTTCTGCTCCGACTCACAGCCTCTCCTTGCCGATATCCGAAAAACCGTGCTTATGATGAAGGACATCGCAGTTCAATTGGAGAAAGACAACCTCCCTGACAAGGCGAAGGAACTGGAAGATGCGGTTATTGAGTTAGTAGGGCTATCTGAGCTCAGTGTGCAATTTTCATCAGCGGTTCAAGCTTTTGCTAACGCATACCAGCCTAAGGAAGAGTTCACTAATTTTAATACGTTGTTTGAGGATGAGCTTTCCAGGTTTAAGGCCAACCAATCTTCAGATGTTCCTAAAAATCCTGTAGTACGCCAATTTAAGGAAGCTGTGTGGAATGTTCATCATGCGGGGCAGCCAATGCCAGGCGAAGAGCAGGAGGATATTGTAATGACCAGTATCCAGTCCAACATTTTGAATATTACCTGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGGGATGTGAATGGGTTGGCTTGGTTGAAGGCTGAAGACACATGCAAATCAATGAGAAAGATGCCTGTATCTGTCTTGTAA
Predicted protein sequences of Glyma.13g273500
>Glyma.13g273500.1.p sequence-type=predicted peptide transcript=Glyma.13g273500.1 locus=Glyma.13g273500 ID=Glyma.13g273500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSSQSRCGSGSAASRLRNAASTFCSDSQPLLADIRKTVLMMKDIAVQLEKDNLPDKAKELEDAVIELVGLSELSVQFSSAVQAFANAYQPKEEFTNFNTLFEDELSRFKANQSSDVPKNPVVRQFKEAVWNVHHAGQPMPGEEQEDIVMTSIQSNILNITCPLSGKPVTELAEPVRSMECRHIYEKKVIMQYLKSKQHQCPISGCPKILQADKLVQDPLLMIEIEEMRKMNRETDVEDYTMLNED*

>Glyma.13g273500.2.p sequence-type=predicted peptide transcript=Glyma.13g273500.2 locus=Glyma.13g273500 ID=Glyma.13g273500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSSQSRCGSGSAASRLRNAASTFCSDSQPLLADIRKTVLMMKDIAVQLEKDNLPDKAKELEDAVIELVGLSELSVQFSSAVQAFANAYQPKEEFTNFNTLFEDELSRFKANQSSDVPKNPVVRQFKEAVWNVHHAGQPMPGEEQEDIVMTSIQSNILNITCPLSGKPVTELAEPVRRDVNGLAWLKAEDTCKSMRKMPVSVL*






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