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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78680.1 | AT | gamma-glutamyl hydrolase 2 | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0006541 | GO-bp | glutamine metabolic process | JGI | N/A | IEA |
| GO:0046900 | GO-bp | tetrahydrofolylpolyglutamate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005576 | GO-cc | extracellular region | EnsemblGenomes | N/A | IEA |
| GO:0005615 | GO-cc | extracellular space | EnsemblGenomes | N/A | IEA |
| GO:0005618 | GO-cc | cell wall | EnsemblGenomes | N/A | IEA |
| GO:0005773 | GO-cc | vacuole | EnsemblGenomes | N/A | IEA |
| GO:0008242 | GO-mf | omega peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| GO:0034722 | GO-mf | gamma-glutamyl-peptidase activity | EnsemblGenomes | N/A | IEA |
| KOG1559 | KOG | Gamma-glutamyl hydrolase | JGI | N/A | IEA |
| PTHR11315 | Panther | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE | JGI | N/A | IEA |
| PF07722 | PFAM | Peptidase C26 | JGI | N/A | IEA |
| PWY-2161B | SoyCyc9 | glutamate removal from folates | Plant Metabolic Network | ISS | |
| PWY-2161B-PMN | SoyCyc9 | folate polyglutamylation II | Plant Metabolic Network | ISS | |
| GN7V-41992 | SoyCyc9-rxn | γ-glutamyl hydrolase | Plant Metabolic Network | ISS |
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Glyma.13g268000 not represented in the dataset |
Glyma.13g268000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g34300 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g268000.1 sequence-type=CDS polypeptide=Glyma.13g268000.1.p locus=Glyma.13g268000 ID=Glyma.13g268000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCAAGCGACGCCGTTTGGGTCCTCTTCCACCTCGCCTTCTTCTCCCAATGCCTTCCCTCCGCCTGGGCCCACTCGGCGATCCTCCTCCCGGGTCAACTCGCCCGTGACTCACCGCAGAGCTGCCCCGCCCCTGACCCCAACCTCTACTACAAGCCAGTCATCGGAATCGTCAGCCATCCCGGCGACGGCGCCTCCGGCCGCCTCAGCAACGCCACCGGCGCCTCCTACATCGCCGCCTCCTATGTCAAATTCGTTGAGGCCGCCGGCGCCCGTGTCGTTCCCCTCATCTATACCGAGCCTCCGGAGAAGCTTCTCAAGAAGCTCGAATTGGTAAATGGGGTTCTCTTCACTGGTGGATGGGCTAAAAGTGGTTTATATTTTGAAACTGTCACAAAAATATTTAAGAAAATTTTAGAGAAGAATGATGCTGGAGATCATTTCCCATTATTTGCCACCTGCTTAGGCTTTGAACTCATAACGATGATCATAAGCCAGGACAATAATATTCTTGAAGAGTTTAGTGCATCAAATCAGGCAAGTACTCTTCAATTTGTGGAGAATGCAAATATCGGAGAAAGTGTCTTTCAAAGATTTCCTCCAGAGTTGTTAGGGAAGATGAGTACAGATTGTCTTGTCATGCAAAACCATCGTTATGGCATATCCCCTGGAAAGCTTCTGAATAATCCAAAGTTGTCTAGTTTTTTTGAGATCTTGACAACTTGCACAGATGAAGATGATAAGGTTTATGTTTCCACTGTACGTTCTCAAAACTATCCTGTGACTGGCTTCCAATGGCATCCAGAGAAAAATGCCTTTGAATGGGGTTCACCAAGAATTCCACACACGGAGGATGCCATTCAGATAACCCAGTATGTTGCAAATTTTTTGGTCAGTGAAGCTAGGAAATCCTTAAACAGACCAGTTGCTCAAGAGTTGCTAGACAATCTCATTTACAATTACAGTCCAACTTATTGTGGGAAGGCTGGGAAAGGATATGATGAAGTTTATATATTTGCGCAAGCCTGA
>Glyma.13g268000.1.p sequence-type=predicted peptide transcript=Glyma.13g268000.1 locus=Glyma.13g268000 ID=Glyma.13g268000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSSDAVWVLFHLAFFSQCLPSAWAHSAILLPGQLARDSPQSCPAPDPNLYYKPVIGIVSHPGDGASGRLSNATGASYIAASYVKFVEAAGARVVPLIYTEPPEKLLKKLELVNGVLFTGGWAKSGLYFETVTKIFKKILEKNDAGDHFPLFATCLGFELITMIISQDNNILEEFSASNQASTLQFVENANIGESVFQRFPPELLGKMSTDCLVMQNHRYGISPGKLLNNPKLSSFFEILTTCTDEDDKVYVSTVRSQNYPVTGFQWHPEKNAFEWGSPRIPHTEDAIQITQYVANFLVSEARKSLNRPVAQELLDNLIYNYSPTYCGKAGKGYDEVYIFAQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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