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Report for Sequence Feature Glyma.13g261900

Feature Type:gene_model
Chromosome:Gm13
Start:36571819
stop:36576038
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g261900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53530.1AT Peptidase S24/S26A/S26B/S26C family protein JGI N/AIEA
GO:0006465GO-bp signal peptide processing EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006627GO-bp protein processing involved in protein targeting to mitochondrion EnsemblGenomesN/AIEA
GO:0033108GO-bp mitochondrial respiratory chain complex assembly EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0042720GO-cc mitochondrial inner membrane peptidase complex EnsemblGenomesN/AIEA
GO:0008236GO-mf serine-type peptidase activity EnsemblGenomesN/AIEA
KOG0171 KOG Mitochondrial inner membrane protease, subunit IMP1 JGI N/AIEA
PTHR12383Panther PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED JGI N/AIEA
PTHR12383:SF9Panther JGI N/AIEA
PF00717PFAM Peptidase S24-like JGI N/AIEA
PF10502PFAM Signal peptidase, peptidase S26 JGI N/AIEA

Expression Patterns of Glyma.13g261900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g261900 not represented in the dataset
Glyma.13g261900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g261900
ParalogEvidenceComments
Glyma.15g244100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g261900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g33660 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g261900
>Glyma.13g261900.1 sequence-type=CDS polypeptide=Glyma.13g261900.1.p locus=Glyma.13g261900 ID=Glyma.13g261900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGATTTGTAGGTTACATAGCGCAATGGAGAAGCGCAGCGAAGGAGGCGTTGGATCGCACAGCCATCACTGTGAAATTCCTGTGCTGGCTTCACTTCACCGGCAACTACCTCTGTTCCCCATGTCACACCTATGGGGTTAGCATGCTCCCCACCCTCAACGTCGCCGGCGACGTTCTTCTCGCCGACCACCTCTCGCCGCGGCTCGGGAACATCGGCCACGGAGACTTGGTGCTTGTTCGGTCCCCTCTGAACCCTAAGATAAGGCTGACGAAGCGCGTCGTCGCTGTGGAAGGGGACACCGTCACCTACTTCGACCCTTTGCACTCTGAGGCTGCTCAAGTTGCAGTGGTGCCAAAGGGACATGTTTGGATTCAAGGGGATAACATTTATGCTTCCCGTGATTCACGGCATTTTGGTCCTGTTCCATATGGTCTTATAGAAGGAAAAGTGTTTTTCCGGGTATGGCCACCTGATAGCTTTGGACCACTAGGCCGTTGA
Predicted protein sequences of Glyma.13g261900
>Glyma.13g261900.1.p sequence-type=predicted peptide transcript=Glyma.13g261900.1 locus=Glyma.13g261900 ID=Glyma.13g261900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRFVGYIAQWRSAAKEALDRTAITVKFLCWLHFTGNYLCSPCHTYGVSMLPTLNVAGDVLLADHLSPRLGNIGHGDLVLVRSPLNPKIRLTKRVVAVEGDTVTYFDPLHSEAAQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRVWPPDSFGPLGR*






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