Glyma.13g261000

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g261000

Feature Type:	gene_model
Chromosome:	Gm13
Start:	36494874
stop:	36510778
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g261000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14570.1	AT	glucan synthase-like 4	JGI	N/A	IEA
GO:0006075	GO-bp	(1->3)-beta-D-glucan biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006075	GO-bp	(1->3)-beta-D-glucan biosynthetic process	JGI	N/A	IEA
GO:0000148	GO-cc	1,3-beta-D-glucan synthase complex	EnsemblGenomes	N/A	IEA
GO:0000148	GO-cc	1,3-beta-D-glucan synthase complex	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	JGI	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0003843	GO-mf	1,3-beta-D-glucan synthase activity	EnsemblGenomes	N/A	IEA
GO:0003843	GO-mf	1,3-beta-D-glucan synthase activity	JGI	N/A	IEA
KOG0916	KOG	1,3-beta-glucan synthase/callose synthase catalytic subunit	JGI	N/A	IEA
PTHR12741	Panther	LYST-INTERACTING PROTEIN LIP5 (DOPAMINE RESPONSIVE PROTEIN DRG-1)	JGI	N/A	IEA
PTHR12741:SF4	Panther	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG	JGI	N/A	IEA
PF02364	PFAM	1,3-beta-glucan synthase component	JGI	N/A	IEA
PWY-6773	SoyCyc9	1,3-β-D-glucan biosynthesis	Plant Metabolic Network		ISS
GN7V-57210	SoyCyc9-rxn	1,3-β-glucan synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.13g261000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g261000

Paralog	Evidence	Comments
Glyma.15g245800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g261000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g33560	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.13g261000

Limit To All Plant Sequences

>Glyma.13g261000.1 sequence-type=CDS polypeptide=Glyma.13g261000.1.p locus=Glyma.13g261000 ID=Glyma.13g261000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGAGATTGTGCCTGCAGAACCCATTGGTGGCATCTATTTCGAGCGAGGAGAGACATCAACAGCATCAGCATCAGCATCAGAGACACCCCATGTCACGTTGGCCATTACCAATGGAAGCAACAACGTTGAATATGTTCCAGAACCGTTTGACAGTGAAAGGTTGCCAACAGTTTTTGCTTCTGAAATCCAAAGGTTCCTTCGAGTGGCCAACTTGCTTGGAAAGGAAGAGCCTCGTGTTGCTTATCTTTGCCGTGTTCATGCCTTTGTGATTGCACACAACTTGGACAAAAATTCTAGTGGAAGGGGTGTTAGACAATTCAAAACTTCACTACTTCATCGACTTGAACAGGATGAGCATGTTACGAAAAAGAAGGGAACAAGTGACATTCGTGAACTTAAAAATGTTTACCGTGCTTACAGGGACTATTATATCAGACATGAGAAAGCATTTGATCTAGAACAAAGTCGAAGGGAGAGATTGATAAATGCCCGAGATATTGCTACTGTTATGTTTGAGGTGCTAAAGACAGTTACAGATCCAGCTAGTTCCCAGGCGCTTATCCAAGGAAATGCAATCCATAAAAAAACTGAATTTAGCATCCTTCCACTTGAGCAAGGATGCATTCAGCATGCGATTATGCAGAAGTCTGAGATTAAGGCTGCCATTGCAGTTATTCGCAATGTTCGTGGTTTACCCCCAGTGCAAGATTTCAAGAAGGACGGAGCCTTTGTGGATCTATTTGATTTTCTTCAGCATTGTTTTGGATTCCAGGAAGCCAATGTGGCCAACCAAAGGGAACATCTTATTCTACTCTTAGCCAATATGCAGACTCGTCAAACTCACAACCAGACATCTGTTTTGAAGTTAGGGGAAGGAGGTGTAGATGAATTGATGAGAAAGTTTTTCAAAAACTATACAAACTGGTGCAGTTTTTGGGAAAGGAAAAGCAATATTCGTTTACCTTTAGTGAAGCAGGAAGCCCAACAATATAAAATTTTATACATTGGGCTTTACCTTCTCATATGGGGGGAGACAGCTAATTTGCGGTTCATGCCAGAATGTCTCTGCTATATTTTTCATCATATGGCATATGAATTGCATGGAATTTTAAGTGGTGCTATCAGCTTAACAACATGGGAAAAGGTCATGCCGGCATATGGAGGAGAAACAGAGTCTTTCCTTAACAATGTTGTCACCCCAATATACACCGTTATAAGACAGGAAGTTGCCAATAGCAAAGGAGGGGCGGCTGATTATTCTGTATGGAGAAACTATGATGATCTTAATGAGTATTTCTGGTCCCCTGATTGTTTCAAAATTGGTTGGCCCATGCGTCTGGACCATGACTTTTTCTTTGTAAAGCCTAGAAATAAACCAGAACCAGATGTCAAGAATGCTCTTGTTGTGTCACCTGGTAAAACAAAAGAGAAGAAAAAGAGAGAAAAGAGGGATGAAGAAGAACCAGAGGATACAAGGGAGGAAATCCATGAACAACAATGGCTAGGAAAGACAAATTTTGTAGAGATCCGTTCATTCTGGCAAATTTTTAGATGCTTTGATAGAATGTGGAGCTTTTTTATTCTATCCCTTCAGGCCATAATAATCATTGCTTGTCATGACTTGGGATCTCCACTGCAGTTATTAGATGCTGTAGTATTTGAGGACATAATTACCATCTTCATTACCTCTGCATATCTTAAACTTATTCAAGCAATTTTAGACGTTGCTTTTATGTGGAAAGCAAGATATACCATGGAATCTTCTCAAAAGGTGAAACTTGTGGTGAAGCTGGTCTTAGCTACTATATGGACTATTGTTCTTCCTGTATGCTATGCTAATTCAAGAAGAAAATATACTTGCTATTCCACAAAGTATGGAAGCTTGGTTGAGGAATGGTGCTTTACTTCCTATATGGTTGCAGCAGCAATATATCTGACAACTAATGCAGTTGAAGTTTTGTTATTTTTTGTCCCTGCTGTTGCTAAGTATATTGAGGTCTCTAATTACAAGATATGCAAAGTTTTGTCTTGGTGGACTCAGCCTAGAATCTATGTTGGTCGGGGGATGCAAGAAGACCAGGTTTCAGTTTTTAAGTACACATTGTTTTGGATATTGGTGTTATCATGTAAATTTGTGTTTAGCTACAGTTTTGAGATAAAACCACTCATAGCACCTACCAGACAGATTATGAAAATTGGTGTAAAGAAGTATGAATGGCATGAGCTTTTTCCAAAAGTCAAAAGTAATGCAGGTGCAATTGTGGCTGTATGGAGCCCTGTAGTAATTGTATATTTTATGGACACACAAATTTGGTATTCTGTTTTCTGTACAATAATTGGTGGACTTTATGGTGTTTTGCATCACCTTGGTGAGATAAGGACACTTGGAATGCTGAGAAGTAAATTTGATTCCTTACCTTCAGCATTTAATGTCTGTCTTATCCCACCATCTTCCAAACGTGGTAAAAAGAAAAGAAAAGGTCTCCTCAGCAATATATTTCAAAAGTTGCCGGATGAAAAAAATGCCACTGCCAAATTTGTTGTGGTATGGAATCAAATTGTAAATCATCTTCGTCTTGAAGACTTAATTAGTAACAGAGAGATGGATTTGATGATGATGCCTGTGTCTTCAGAATTGTTTTCTGCTAAGGTTCGTTGGCCTGTTTTCCTATTAGCAAATAAGTTTTCTACAGCTTTGACCATTGCTAAAGATTTTGAGGGAAAGGAAGAGATTCTTGTCAAGAAAATTACAAAAGACAAATACATGTTTTATGCCGTAAGAGAGTGTTACCAGTCACTGAAATACGTGCTTGAAATTCTTGTTGTGGGTAGCATTGAGAAAAGGATCATATGTGATATACTAAGCAAAATTGAAAAGCATATCCAAGAAACAAGTCTTCTAAAGAACTTTAACTTGAAAGTTCTCCCAGCTCTACATGCTAAAGTTGTTGAGCTAGCTGAACTTCTGATGGAGGGAGATAAAGACCATCAGCACAAAGTTGTGAAGGCCTTGCTAGATGTGTTTGAACTTGTAACAAATGAGATGATGTTTGATTCCAGAATATTGGATATGTTCCACTTTCCCGAACAAAATGAGTGTGGCTTTGTCTATTTTAGAAATGATGATCAACTATTTGACAGTGTGGAAATGAATAGAGATTTCTATCCATTTGCCAAAGAGAATTCCATCCATTTTCCATTGCCAGAAAGTGGTCCTCTGATGGAAAAGATCAAGCGTTTCCATTTGTTGCTTACAGTAAAAGATACAGCGATGGATGTGCCTTCAAACTTAGATGCCCGTAGGCGCATATCATTCTTTGCTACTTCTCTGTTTACAGATATGCCTGATGCTCCAAAAGTGCACAATATGATGCCATTCTGTGTTATAACTCCACATTACATCGAGGACATTAATTTTTCGCTTAAGGAGCTTGGTTCAGATAAAGAGGAGGACTCCATCATCTTCTACATGCAAAAGATATATCCAGATGAATGGACAAATTTTTTGGAACGTATGGGTTGTGATAACCGTAAGAGTTTAGAAGATGAACACAAAACAGAAGATCTTAGACTGTGGGCTTCATTTCGGGGTCAGACACTAAGCAGAACAGTTAGAGGGATGATGTACTACAGAGAAGCCTTAAAATTACAAGCATTCCTTGACATGGCTGAAGAAGAAGATATTCTTGAGGGCTATGAGACTGCTGAAAGAGGTAACCGGGCATTGTTTGCTCGTCTAGAAGCACTAGCAGACATGAAATACACCTATGTCATTTCCTGTCAATCATTTGCATCACAAAAGGCTTCAAATGATCCTCGTTATCAAGATATGATCGACTTGATGATAAGGTATCCATCTCTTCGTGTTGCTTATGTTGAGGAAAAAGAGGAGATAGTGCAGGGTAAACCTCACAAAGTATATTCATCTAAACTGGTTAAAGTTGTCAATGGTTATGAACAGACAATATATCAAATAAAACTACCAGGCCCACCACATCTTGGAGAAGGGAAGCCTGAAAACCAAAACAATGCAATAATATTCACTCGTGGTGAAGCACTCCAAACAATTGATATGAACCAAGATAATTACTTGGAAGAAGCTCTTAAAATGAGAAACCTTCTCCAAGAATTTCTTCGGCGCCAAGGAAGGCGTCCTCCTACAATACTTGGTTTAAGGGAACACATTTTCACAGGAAGTGTGTCTTCTCTGGCTGGGTTCATGTCATATCAAGAGACCAGCTTTGTAACTATTGGTCAAAGGGTTCTGGCTAATCCTCTCAGGGTGCGGTTCCACTATGGCCATCCAGATGTATTTGATAGGGTTTTTCATATCACGAGAGGAGGAATAAGCAAAGCATCTAAAACAATTAACTTGAGTGAGGATGTTTTTGCTGGATTTAATTCAACTTTAAGACGGGGATGTATTTCCTACCATGAATACTTGCAAATTGGCAAAGGTCGTGATGTAGCTCTAAACCAGATCTCAAAATTTGAAGCCAAGGTAGCAAATGGAAACTGTGAGCAAACTATAAGCCGTGACATGTTTCGCCTTGGGCGGCAATTTGATTTTTTCCGGATGCTATCATGCTATTTCACTACAGTTGGATTTTACTTCAGCAGCTTGATTTCAGTGATAGGAATCTATGTATTTCTCTACGGGCAGTTATACCTGGTTCTTAGTGGATTGGAAAGAGCACTTATCATTGAGGCTCGAATCAAGAATGTACAGTCCTTAGAAACGGCTCTTGCCTCCCAGTCATTCATACAACTTGGACTTCTGACAGGCTTACCCATGGTGATGGAAATAGGACTTGAAAGAGGTTTCCTCACAGCCCTAAAGGACTTTGTCCTTATGCAATTGCAATTGGCTGCTGTTTTCTTCACTTTCGCCCTAGGAACGAAAACACATTACTATGGCCGAACGCTTTTGCACGGGGGTGCAAAGTACAGACCGACAGGGCGCAAAGTTGTATTCCATGCTAGCTTCACTGAGAATTACAGATTGTATTCAAGAAGCCACTTTGTTAAGGCATTTGAGCTATTGCTGCTGTTGATTGTTTATAACATGTTCAGGAGGTCCTATCAAAGTAGCATGGCATACGTGTTGATAACATATGCCATTTGGTTCATGTCATTGACTTGGTTGTGTGCACCTTTTCTTTTTAACCCTGCTGGGTTCAGTTGGACCAAGACAGTAGATGATTGGAAAGAGTGGAATAAATGGATCAGACAACAGGGTGGTATAGGAATTCAACAAGATAGAAGTTGGCATTCTTGGTGGCACGATGAGCAAGCTCATCTTCGCTGGTCAGGTTTTGGCTCTAGGTTGACTGAAGTATTGCTTTCTCTTCGTTTTTTCATCTATCAGTATGGTTTGGTCTATCACCTAGACATCTCTCAGCATAGCAAAAATTTTCTTGTTTATGTCCTTTCTTGGATTGTGATTGTTGCAATTTTCCTCTTGGTGAAGGCTGTTAACATGGGAAGGCAACTACTCAGTGCTAATTATCAGCTTGGATTCAGACTTTTCAAAGCATTCTTGTTCCTGGCTGTTCTTGCCATCATCTTTACTCTTTCTGTTATATGCGAGTTGTCGTTGACGGACATTTTCGTTTGCTGTCTAGCATTCATGCCAACCGCGTGGGGATTGATAATGATTGCACAAGCTGCAAGGCCAAAAATAGAGCACACAGGGTTGTGGGACTTCACACGTGCACTTGCTAGAGAATTTGATTATGGAATGGGGATAGTTCTTTTTGGACCTATTGCTATTTTGGCGTGGTTGCCAATCATTAAAGCCTTCCATGCTCGTTTTCTTTTCAATGAGGCATTCAAAAGGCACTTGCAAATCCAACCAATTCTATCAGGAAAAAAGAAGAAGCACAGAACTTGA

Predicted protein sequences of Glyma.13g261000

Limit To All Plant Sequences

>Glyma.13g261000.1.p sequence-type=predicted peptide transcript=Glyma.13g261000.1 locus=Glyma.13g261000 ID=Glyma.13g261000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEIVPAEPIGGIYFERGETSTASASASETPHVTLAITNGSNNVEYVPEPFDSERLPTVFASEIQRFLRVANLLGKEEPRVAYLCRVHAFVIAHNLDKNSSGRGVRQFKTSLLHRLEQDEHVTKKKGTSDIRELKNVYRAYRDYYIRHEKAFDLEQSRRERLINARDIATVMFEVLKTVTDPASSQALIQGNAIHKKTEFSILPLEQGCIQHAIMQKSEIKAAIAVIRNVRGLPPVQDFKKDGAFVDLFDFLQHCFGFQEANVANQREHLILLLANMQTRQTHNQTSVLKLGEGGVDELMRKFFKNYTNWCSFWERKSNIRLPLVKQEAQQYKILYIGLYLLIWGETANLRFMPECLCYIFHHMAYELHGILSGAISLTTWEKVMPAYGGETESFLNNVVTPIYTVIRQEVANSKGGAADYSVWRNYDDLNEYFWSPDCFKIGWPMRLDHDFFFVKPRNKPEPDVKNALVVSPGKTKEKKKREKRDEEEPEDTREEIHEQQWLGKTNFVEIRSFWQIFRCFDRMWSFFILSLQAIIIIACHDLGSPLQLLDAVVFEDIITIFITSAYLKLIQAILDVAFMWKARYTMESSQKVKLVVKLVLATIWTIVLPVCYANSRRKYTCYSTKYGSLVEEWCFTSYMVAAAIYLTTNAVEVLLFFVPAVAKYIEVSNYKICKVLSWWTQPRIYVGRGMQEDQVSVFKYTLFWILVLSCKFVFSYSFEIKPLIAPTRQIMKIGVKKYEWHELFPKVKSNAGAIVAVWSPVVIVYFMDTQIWYSVFCTIIGGLYGVLHHLGEIRTLGMLRSKFDSLPSAFNVCLIPPSSKRGKKKRKGLLSNIFQKLPDEKNATAKFVVVWNQIVNHLRLEDLISNREMDLMMMPVSSELFSAKVRWPVFLLANKFSTALTIAKDFEGKEEILVKKITKDKYMFYAVRECYQSLKYVLEILVVGSIEKRIICDILSKIEKHIQETSLLKNFNLKVLPALHAKVVELAELLMEGDKDHQHKVVKALLDVFELVTNEMMFDSRILDMFHFPEQNECGFVYFRNDDQLFDSVEMNRDFYPFAKENSIHFPLPESGPLMEKIKRFHLLLTVKDTAMDVPSNLDARRRISFFATSLFTDMPDAPKVHNMMPFCVITPHYIEDINFSLKELGSDKEEDSIIFYMQKIYPDEWTNFLERMGCDNRKSLEDEHKTEDLRLWASFRGQTLSRTVRGMMYYREALKLQAFLDMAEEEDILEGYETAERGNRALFARLEALADMKYTYVISCQSFASQKASNDPRYQDMIDLMIRYPSLRVAYVEEKEEIVQGKPHKVYSSKLVKVVNGYEQTIYQIKLPGPPHLGEGKPENQNNAIIFTRGEALQTIDMNQDNYLEEALKMRNLLQEFLRRQGRRPPTILGLREHIFTGSVSSLAGFMSYQETSFVTIGQRVLANPLRVRFHYGHPDVFDRVFHITRGGISKASKTINLSEDVFAGFNSTLRRGCISYHEYLQIGKGRDVALNQISKFEAKVANGNCEQTISRDMFRLGRQFDFFRMLSCYFTTVGFYFSSLISVIGIYVFLYGQLYLVLSGLERALIIEARIKNVQSLETALASQSFIQLGLLTGLPMVMEIGLERGFLTALKDFVLMQLQLAAVFFTFALGTKTHYYGRTLLHGGAKYRPTGRKVVFHASFTENYRLYSRSHFVKAFELLLLLIVYNMFRRSYQSSMAYVLITYAIWFMSLTWLCAPFLFNPAGFSWTKTVDDWKEWNKWIRQQGGIGIQQDRSWHSWWHDEQAHLRWSGFGSRLTEVLLSLRFFIYQYGLVYHLDISQHSKNFLVYVLSWIVIVAIFLLVKAVNMGRQLLSANYQLGFRLFKAFLFLAVLAIIFTLSVICELSLTDIFVCCLAFMPTAWGLIMIAQAARPKIEHTGLWDFTRALAREFDYGMGIVLFGPIAILAWLPIIKAFHARFLFNEAFKRHLQIQPILSGKKKKHRT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain