Glyma.13g259100

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Report for Sequence Feature Glyma.13g259100

Feature Type:	gene_model
Chromosome:	Gm13
Start:	36342871
stop:	36350571
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g259100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78420.1	AT	RING/U-box superfamily protein	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
KOG2789	KOG	Putative Zn-finger protein	JGI	N/A	IEA

Expression Patterns of Glyma.13g259100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g259100

Paralog	Evidence	Comments
Glyma.15g249000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g259100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g33260	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g259100

Limit To All Plant Sequences

>Glyma.13g259100.2 sequence-type=transcript locus=Glyma.13g259100 ID=Glyma.13g259100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAATTAttctttcctccttcactactccttccttcccttccctctcatctcttcttttctcttctcttctcttctttcttatcattttgtctctattccttctctctttctcCTGCAACAACAACCATCTAAGGGATTTCGGGATGCGTTTCTGCGGTCTGTTGATTGTGTTGGTTTGTTGAGTGTGGCGTTAACGTAATTTGGTTTTGAGTGAAGATGATTttgtgatgtggttgagtgagtggtttttgtagtggaaggtttgttacttttgttgttgttgttgttgttgtgttggtttattttgttgAAGAGTTCGGAACATAGTCGGCGGACGAGAAAAATTGGAATTTTTGGATGGGTAATAAACTTGGGAGGAGGAGACAAGTGGTAGATGAGAAATATACGAGGCCGCAAGGGTTGTATAATCATAAAGATGTGGATCACAAGAAGCTGAGGAAGCTAATACTAGAATCGAAGTTAGCACCTTGCTATCCCGGAGATGAAGAAACCGCATACGATCGTGAAGAGTGCCCGATTTGCTTTCTGTATTATCCAAGTCTAAACCGATCAAGATGTTGCACAAAGAGCATTTGTACAGAGTGCTTTTTGCAGATGAAAGTTCCAAATTCAACCCGGCCTACACAATGTCCCTTCTGCAAAACGGCAAATTATGCTGTGGAGTATCGCGGTGTGAAATCTAAAGAAGAGAAGGGATTGGAACAGATTGAAGAGCAACGTGTTATAGAGGCAAAAATTAGGATGCGGCAGCAGGAACTTCAGGATGAAGAGGAAAGAATGCACAAAAGACTGGAAATGAGCTCCTCGAATGTGAATGTGGCAGTTGCAGATGTTGAATACAGTTCAAATGCAGTGTCTTCATCTTCAGTTTCTGTTGTTGAAAATGATGAAATTGTTTCTTCTCAAGACTCATGTGCCACATCAGTGGTTAGAGCAAATGCAACCACTAGGACCAATAGAGATGATGAATTTGACGTTGACCTTGAGGACATCATGGTCATGGAAGCAATTTGGCTTTCCATTCAGGAGAATGGCAGGCGGAGAAATTTATCTTTTGTCGATGCTACTTCTGGACACTATGTAGCTGACGGCCGCTATGTTTCATCCGTCTCATCTGTCTCATCCGTCATGGGTCCACCAACGGGATCATCCTCGTCTCCATCTGGGGGTCTCGCTTGTGCCATTGCAGCTCTTGCTGAGCGCCAGCAAATGGCTGGAGAATCATCTATGAGCCTCACCAATGAAAATATGCCATCATTCAACACCCTACCGGGTTCCAGAAGATTTTATAACAGACTTGGTAGGGATATGGCTAATTATCCGCCTGGTGACAACCTCAATGAGGAGCCACTGGATGAAGCTGTGACAATGACTAGGAGTCATGGTGAATGGGACATGGACCATGGGACACAGTTGACTGAAACAGCAACCAGCTATACAAACTCTGTCGCAGCAGAAGATCGTGGTGAACTATCATCTTTGCCACGGTCTGATGACAATGATGGAAGCCTTCAAAGTGCCACAGAACCCATTGTTCCCGAGAGTTTTGAGGAGCAGATGATGCTCGCCATGGCTGTCTCTTTGGCTGAAGCTCGAGCCATGTCAAGTGGACAGAGTGCTTCTTGGCAGTAGTTTTTGGTTGAGGTGCTGGTTTAATCTTTCTTAAATTGGTGATGCTTGCCTTGGCTATTTGACAAGCCAAGTCCAAGGTTGAGAATTTGAGGGAAGTTCACTCGTATGCAATTTGTTCAAGGATCAGGTAGTGATCTCTTCTCACAAATTTATATATATAAGTATCAAAAGAAAACTAATGATTCTAGTTGGTGAAAGGTTGCTGCTTAATGCCATTTTTTTTACTTGTGCTCGATGTCCTCTCCTGCCCCCTCATTGGTTTTCTGTAAATAGTTTGTCTTTGATAGATGTACTCTCATTCTTACAGTAATATATGGCACATTTTAGACACGTACTGAAGAAGAAAGGGAATTAAAATTCTGTCATGAAATTTTTTTATGTGGTTCTATTCATTGAGATCTGACTTTATATAGAAGTTATGCTTGTAAGGCGTGACACTTAAAATTTATCTGCAGAACTCACATAAATGGGTAGATCTGTGGGTGGATTTTGTAGCTTTTTGGACCTAGGAAGGAAAATGAGTTAAATGTGGTTTCTCAAAGAAGCTTCCCCACCCGTCCTCCCTTTTTTTTTTCTTTGCTTTACACGCATAGGTGAAAGCAAAGGCGGCTGTAACTCATGTTAAACTGTTTTATGGTAAGCTGT

Coding sequences of Glyma.13g259100

Limit To All Plant Sequences

>Glyma.13g259100.1 sequence-type=CDS polypeptide=Glyma.13g259100.1.p locus=Glyma.13g259100 ID=Glyma.13g259100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAATAAACTTGGGAGGAGGAGACAAGTGGTAGATGAGAAATATACGAGGCCGCAAGGGTTGTATAATCATAAAGATGTGGATCACAAGAAGCTGAGGAAGCTAATACTAGAATCGAAGTTAGCACCTTGCTATCCCGGAGATGAAGAAACCGCATACGATCGTGAAGAGTGCCCGATTTGCTTTCTGTATTATCCAAGTCTAAACCGATCAAGATGTTGCACAAAGAGCATTTGTACAGAGTGCTTTTTGCAGATGAAAGTTCCAAATTCAACCCGGCCTACACAATGTCCCTTCTGCAAAACGGCAAATTATGCTGTGGAGTATCGCGGTGTGAAATCTAAAGAAGAGAAGGGATTGGAACAGATTGAAGAGCAACGTGTTATAGAGGCAAAAATTAGGATGCGGCAGCAGGAACTTCAGGATGAAGAGGAAAGAATGCACAAAAGACTGGAAATGAGCTCCTCGAATGTGAATGTGGCAGTTGCAGATGTTGAATACAGTTCAAATGCAGTGTCTTCATCTTCAGTTTCTGTTGTTGAAAATGATGAAATTGTTTCTTCTCAAGACTCATGTGCCACATCAGTGGTTAGAGCAAATGCAACCACTAGGACCAATAGAGATGATGAATTTGACGTTGACCTTGAGGACATCATGGTCATGGAAGCAATTTGGCTTTCCATTCAGGAGAATGGCAGGCGGAGAAATTTATCTTTTGTCGATGCTACTTCTGGACACTATGTAGCTGACGGCCGCTATGTTTCATCCGTCTCATCTGTCTCATCCGTCATGGGTCCACCAACGGGATCATCCTCGTCTCCATCTGGGGGTCTCGCTTGTGCCATTGCAGCTCTTGCTGAGCGCCAGCAAATGGCTGGAGAATCATCTATGAGCCTCACCAATGAAAATATGCCATCATTCAACACCCTACCGGGTTCCAGAAGATTTTATAACAGACTTGGTAGGGATATGGCTAATTATCCGCCTGGTGACAACCTCAATGAGGAGCCACTGGATGAAGCTGTGACAATGACTAGGAGTCATGGTGAATGGGACATGGACCATGGGACACAGTTGACTGAAACAGCAACCAGCTATACAAACTCTGTCGCAGCAGAAGATCGTGGTGAACTATCATCTTTGCCACGGTCTGATGACAATGATGGAAGCCTTCAAAGTGCCACAGAACCCATTGTTCCCGAGAGTTTTGAGGAGCAGATGATGCTCGCCATGGCTGTCTCTTTGGCTGAAGCTCGAGCCATGTCAAGTGGACAGAGTGCTTCTTGGCAGTAG

>Glyma.13g259100.2 sequence-type=CDS polypeptide=Glyma.13g259100.2.p locus=Glyma.13g259100 ID=Glyma.13g259100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAATAAACTTGGGAGGAGGAGACAAGTGGTAGATGAGAAATATACGAGGCCGCAAGGGTTGTATAATCATAAAGATGTGGATCACAAGAAGCTGAGGAAGCTAATACTAGAATCGAAGTTAGCACCTTGCTATCCCGGAGATGAAGAAACCGCATACGATCGTGAAGAGTGCCCGATTTGCTTTCTGTATTATCCAAGTCTAAACCGATCAAGATGTTGCACAAAGAGCATTTGTACAGAGTGCTTTTTGCAGATGAAAGTTCCAAATTCAACCCGGCCTACACAATGTCCCTTCTGCAAAACGGCAAATTATGCTGTGGAGTATCGCGGTGTGAAATCTAAAGAAGAGAAGGGATTGGAACAGATTGAAGAGCAACGTGTTATAGAGGCAAAAATTAGGATGCGGCAGCAGGAACTTCAGGATGAAGAGGAAAGAATGCACAAAAGACTGGAAATGAGCTCCTCGAATGTGAATGTGGCAGTTGCAGATGTTGAATACAGTTCAAATGCAGTGTCTTCATCTTCAGTTTCTGTTGTTGAAAATGATGAAATTGTTTCTTCTCAAGACTCATGTGCCACATCAGTGGTTAGAGCAAATGCAACCACTAGGACCAATAGAGATGATGAATTTGACGTTGACCTTGAGGACATCATGGTCATGGAAGCAATTTGGCTTTCCATTCAGGAGAATGGCAGGCGGAGAAATTTATCTTTTGTCGATGCTACTTCTGGACACTATGTAGCTGACGGCCGCTATGTTTCATCCGTCTCATCTGTCTCATCCGTCATGGGTCCACCAACGGGATCATCCTCGTCTCCATCTGGGGGTCTCGCTTGTGCCATTGCAGCTCTTGCTGAGCGCCAGCAAATGGCTGGAGAATCATCTATGAGCCTCACCAATGAAAATATGCCATCATTCAACACCCTACCGGGTTCCAGAAGATTTTATAACAGACTTGGTAGGGATATGGCTAATTATCCGCCTGGTGACAACCTCAATGAGGAGCCACTGGATGAAGCTGTGACAATGACTAGGAGTCATGGTGAATGGGACATGGACCATGGGACACAGTTGACTGAAACAGCAACCAGCTATACAAACTCTGTCGCAGCAGAAGATCGTGGTGAACTATCATCTTTGCCACGGTCTGATGACAATGATGGAAGCCTTCAAAGTGCCACAGAACCCATTGTTCCCGAGAGTTTTGAGGAGCAGATGATGCTCGCCATGGCTGTCTCTTTGGCTGAAGCTCGAGCCATGTCAAGTGGACAGAGTGCTTCTTGGCAGTAG

Predicted protein sequences of Glyma.13g259100

Limit To All Plant Sequences

>Glyma.13g259100.1.p sequence-type=predicted peptide transcript=Glyma.13g259100.1 locus=Glyma.13g259100 ID=Glyma.13g259100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNKLGRRRQVVDEKYTRPQGLYNHKDVDHKKLRKLILESKLAPCYPGDEETAYDREECPICFLYYPSLNRSRCCTKSICTECFLQMKVPNSTRPTQCPFCKTANYAVEYRGVKSKEEKGLEQIEEQRVIEAKIRMRQQELQDEEERMHKRLEMSSSNVNVAVADVEYSSNAVSSSSVSVVENDEIVSSQDSCATSVVRANATTRTNRDDEFDVDLEDIMVMEAIWLSIQENGRRRNLSFVDATSGHYVADGRYVSSVSSVSSVMGPPTGSSSSPSGGLACAIAALAERQQMAGESSMSLTNENMPSFNTLPGSRRFYNRLGRDMANYPPGDNLNEEPLDEAVTMTRSHGEWDMDHGTQLTETATSYTNSVAAEDRGELSSLPRSDDNDGSLQSATEPIVPESFEEQMMLAMAVSLAEARAMSSGQSASWQ*

>Glyma.13g259100.2.p sequence-type=predicted peptide transcript=Glyma.13g259100.2 locus=Glyma.13g259100 ID=Glyma.13g259100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNKLGRRRQVVDEKYTRPQGLYNHKDVDHKKLRKLILESKLAPCYPGDEETAYDREECPICFLYYPSLNRSRCCTKSICTECFLQMKVPNSTRPTQCPFCKTANYAVEYRGVKSKEEKGLEQIEEQRVIEAKIRMRQQELQDEEERMHKRLEMSSSNVNVAVADVEYSSNAVSSSSVSVVENDEIVSSQDSCATSVVRANATTRTNRDDEFDVDLEDIMVMEAIWLSIQENGRRRNLSFVDATSGHYVADGRYVSSVSSVSSVMGPPTGSSSSPSGGLACAIAALAERQQMAGESSMSLTNENMPSFNTLPGSRRFYNRLGRDMANYPPGDNLNEEPLDEAVTMTRSHGEWDMDHGTQLTETATSYTNSVAAEDRGELSSLPRSDDNDGSLQSATEPIVPESFEEQMMLAMAVSLAEARAMSSGQSASWQ*

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