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Report for Sequence Feature Glyma.13g248900

Feature Type:gene_model
Chromosome:Gm13
Start:35685233
stop:35690583
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g248900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21380.1AT receptor kinase 3 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0048544GO-bp recognition of pollen EnsemblGenomesN/AIEA
GO:0048544GO-bp recognition of pollen JGI N/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0031625GO-mf ubiquitin protein ligase binding EnsemblGenomesN/AIEA
KOG1187 KOG Serine/threonine protein kinase JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF703Panther PROTEIN KINASE FAMILY PROTEIN JGI N/AIEA
PF00954PFAM S-locus glycoprotein family JGI N/AIEA
PF01453PFAM D-mannose binding lectin JGI N/AIEA
PF07714PFAM Protein tyrosine kinase JGI N/AIEA
PF08276PFAM PAN-like domain JGI N/AIEA
PF11883PFAM Domain of unknown function (DUF3403) JGI N/AIEA

Expression Patterns of Glyma.13g248900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g248900
ParalogEvidenceComments
Glyma.15g065100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g248900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g32250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g248900
>Glyma.13g248900.1 sequence-type=CDS polypeptide=Glyma.13g248900.1.p locus=Glyma.13g248900 ID=Glyma.13g248900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTGGTTTCTTATTCTTCCTCTTTTGCTTCTTCTTGGCATCATCGCAACACATCACAATTTCATTCTCCGCAGACACATTAACCTCAACACAAATTCTTCTAACCAACCAAACCCTCATATCCCCAAGCCAAGTCTTCGCTCTAGGCTTCTTTCCGGGGACCAATTCCACTTGGTACTTAGGCACATGGTACAACAACATCAACGACAGAACCATAGTATGGGTAGCCAACAGAGACAACCCTCTCGAGAACTCCAATGGTTTTCTAACCATCGCAGAAAACGGAAACATAGTCCTTACAAATCCATCAATGAAGAAGTACCCCGTTTGGTCCTCCAACGCAACAACCAAAGCCAACAACAACAATCGCGTGCTTCAGCTTCTGGACACAGGAAACCTAGTTCTCAGAGAAGCAAACATAACCGACCCAACAAAATATCTCTGGCAAAGCTTCGATTACCCAACAGACACGCTCTTACCCGGCATGAAAATGGGGTGGAACCTAGACACTGGCGTTGAGAAACACTTAACATCGTGGAAAGCCACAGGGAGCGACCCTTCAAGCGGAGATTACTCTTTCAAGATAGACACTCGTGGAATACCAGAAATTTTCTTAAGGGATGACCAGAACATAACATACAGAAGTGGCCCTTGGAATGGTGAGAGATTCAGCGGGGTGCCAGAGATGCAACCCAACACAGATACTATTACGTTTGATTTTTCTTACGATAAAGATGGTGTGTACTATTTGTTTTCCATTGGAAGCCGTTCTATTTTGTCGAGGCTGGTTTTGACTTCGGGTGGTGAACTTCAGCGTCTTACTTGGGTGCCAAGTAGAAACACTTGGACCAAGTTTTGGTACGCGCGTAAGGATCAGTGTGATGGCTACAGAGAGTGTGGTCCTTATGGTTTGTGTGACTCCAACGCTTCGCCGGTTTGCACGTGCGTGGGAGGGTTCAGGCCGAGGAACTTGCAAGCGTGGAATTTGAGAGATGGTTCTGATGGGTGTGTGAGGAACACGGATTTGGATTGTGGGAGGGACAAGTTTTTGCATTTGGAGAACGTGAAGCTGCCAGAGACAACCTATGTGTTTGCGAACAGGACTATGAACCTAAGGGAGTGTGAGGATTTGTGCCGTAAGAATTGTTCTTGCACTGCTTATGCCAACATTGAGATCACAAACGGTGGAAGCGGGTGCGTGACGTGGACTGGTGAACTCATAGATATGAGGCTGTATCCTGCGGGTGGACAAGATCTTTATGTTAGATTAGCAGCTTCTGACGTAGATGACATAGGATCTGGAGGTGGCTCTCACAAGAAAAACCATATAGGTGAGGTTGTAGGAATTACAATTTCTGCAGCTGTAATAATATTGGGATTGGTTGTCATTTTCTGGAAGAAGAGGAAACTGTTGAGTATATCAAATGTGAAGGCAGGCCCTAGAGGTTCTTTCCAAAGAAGTCGGGATTTGCTGACGACTGTACAAAGGAAGTTTTCAACTAATAGAAAAAACTCAGGAGAAAGGAACATGGATGACATAGAGTTGCCAATGTTTGATTTTAATACCATAACAATGGCCACAGACAACTTCTCTGAAGCAAATAAACTTGGACAAGGAGGATTTGGTATTGTTTACAGGGGAAGGTTGATGGAAGGCCAAGATATTGCTGTCAAGAGGCTATCAAAAAGCTCCATGCAAGGAGTTGAAGAATTTAAGAATGAAATCAAGTTAATTGTCAGGCTTCAACATCGAAATCTTGTTCGGCTCTTCGGTTGTTGCATTGAGATGCATGAGAGGTTGCTAGTGTATGAGTACATGGAAAATAGAAGTCTTGATTCCATTTTGTTTGACAAAGCCAAAAAACCCATATTGGACTGGAAAAGACGCTTCAACATTATATGCGGCATAGCTAGAGGGCTACTTTATCTGCACCATGATTCCAGATTTAGGATTATCCATAGGGATCTCAAGGCTAGCAACATTCTACTTGACAGTGAAATGAACCCAAAGATATCAGACTTTGGGATGGCTAGACTTTTTGGCTCAAATCAGACAGAAGCAAACACATCGAGAGTTGTTGGGACATATGGCTATATGTCTCCTGAATATGCTATGGACGGGAACTTCTCAGTGAAATCTGATGTTTTTAGCTTTGGAGTTTTAGTGCTGGAAATTATAACTGGGAAGAAAAATAGAGGATTCTATTACTCAAATGAAGATATGAATCTTCTAGGGAATGCATGGAGGCAGTGGAGAGATGGCAGTGCATTGGAACTCATTGATTCGTCCACTGGCGATTCATATTCACCATCTGAAGTTCTTAGATGCATACACGTTGGACTCTTGTGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGTCTTCAGTGTTGTTGATGCTGAGTAGTGAATCCGTGTTAATGCCACAACCCAGAAACCCTGGGTTTTCCATAGGGAAGAATCCTGCGGAGACTGATTCTTCTTCAAGCAAGAAAGATGAATCATGGAGTGTGAACCAAGTCACAGTCACATTACTAGATGCTAGGTAG
Predicted protein sequences of Glyma.13g248900
>Glyma.13g248900.1.p sequence-type=predicted peptide transcript=Glyma.13g248900.1 locus=Glyma.13g248900 ID=Glyma.13g248900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPGFLFFLFCFFLASSQHITISFSADTLTSTQILLTNQTLISPSQVFALGFFPGTNSTWYLGTWYNNINDRTIVWVANRDNPLENSNGFLTIAENGNIVLTNPSMKKYPVWSSNATTKANNNNRVLQLLDTGNLVLREANITDPTKYLWQSFDYPTDTLLPGMKMGWNLDTGVEKHLTSWKATGSDPSSGDYSFKIDTRGIPEIFLRDDQNITYRSGPWNGERFSGVPEMQPNTDTITFDFSYDKDGVYYLFSIGSRSILSRLVLTSGGELQRLTWVPSRNTWTKFWYARKDQCDGYRECGPYGLCDSNASPVCTCVGGFRPRNLQAWNLRDGSDGCVRNTDLDCGRDKFLHLENVKLPETTYVFANRTMNLRECEDLCRKNCSCTAYANIEITNGGSGCVTWTGELIDMRLYPAGGQDLYVRLAASDVDDIGSGGGSHKKNHIGEVVGITISAAVIILGLVVIFWKKRKLLSISNVKAGPRGSFQRSRDLLTTVQRKFSTNRKNSGERNMDDIELPMFDFNTITMATDNFSEANKLGQGGFGIVYRGRLMEGQDIAVKRLSKSSMQGVEEFKNEIKLIVRLQHRNLVRLFGCCIEMHERLLVYEYMENRSLDSILFDKAKKPILDWKRRFNIICGIARGLLYLHHDSRFRIIHRDLKASNILLDSEMNPKISDFGMARLFGSNQTEANTSRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEIITGKKNRGFYYSNEDMNLLGNAWRQWRDGSALELIDSSTGDSYSPSEVLRCIHVGLLCVQERAEDRPTMSSVLLMLSSESVLMPQPRNPGFSIGKNPAETDSSSSKKDESWSVNQVTVTLLDAR*






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