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Report for Sequence Feature Glyma.13g243100

Feature Type:gene_model
Chromosome:Gm13
Start:35256095
stop:35257810
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g243100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G49910.1AT Translation protein SH3-like family protein JGI N/AIEA
GO:0002181GO-bp cytoplasmic translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0042273GO-bp ribosomal large subunit biogenesis EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0015934GO-cc large ribosomal subunit EnsemblGenomesN/AIEA
GO:0022625GO-cc cytosolic large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
KOG3401 KOG 60S ribosomal protein L26 JGI N/AIEA
PTHR11143Panther 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER JGI N/AIEA
PF00467PFAM KOW motif JGI N/AIEA

Expression Patterns of Glyma.13g243100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g243100 not represented in the dataset
Glyma.13g243100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g243100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g31650 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g243100
>Glyma.13g243100.1 sequence-type=CDS polypeptide=Glyma.13g243100.1.p locus=Glyma.13g243100 ID=Glyma.13g243100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTCAATCCACGTGTGTCGAGCAGCCGCCGCAAGAGCCGAAAGGCTCATTTCACGGCGCCGTCGAGCGTGCGGCGGGTGCTTATGAGCGCCCCTCTGTCGGCGGAGCTGCGGTCCAAGTACAACGTGAGGTCGATCCCAGTACGGAAGGAGGACGAGGTGCAGGTGGTGCGAGGAACATACAAGGGTCGCGAGGGGAAGGTGACTCAGGTCTACCGTCGAAAGTGGGTGATTCACATTGAGCGCATAACCCGCGAGAAGGTGAATGGTTCCACCGTCAACGTTGGGATTCACCCCTCCAAGGTTGTGCTGACCAAGCTCAAATTGGACAAGGACCGTAAGGCCATTCTCGATCGCAAGGCCAAGGGTCGCGCCGCCTCCGATAAGGAGAAGGGTACCAAGTTCGCTCCCGAAGATATCATGCAAACCGTTGATTAG
Predicted protein sequences of Glyma.13g243100
>Glyma.13g243100.1.p sequence-type=predicted peptide transcript=Glyma.13g243100.1 locus=Glyma.13g243100 ID=Glyma.13g243100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSAELRSKYNVRSIPVRKEDEVQVVRGTYKGREGKVTQVYRRKWVIHIERITREKVNGSTVNVGIHPSKVVLTKLKLDKDRKAILDRKAKGRAASDKEKGTKFAPEDIMQTVD*






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