SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g241000

Feature Type:gene_model
Chromosome:Gm13
Start:35091098
stop:35093516
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g241000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48560.1AT chlorsulfuron/imidazolinone resistant 1 JGI N/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009082GO-bp branched-chain amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009097GO-bp isoleucine biosynthetic process EnsemblGenomesN/AIEA
GO:0009099GO-bp valine biosynthetic process EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003984GO-mf acetolactate synthase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0030976GO-mf thiamine pyrophosphate binding EnsemblGenomesN/AIEA
GO:0030976GO-mf thiamine pyrophosphate binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
KOG4166 KOG Thiamine pyrophosphate-requiring enzyme JGI N/AIEA
PTHR18968Panther THIAMINE PYROPHOSPHATE ENZYMES JGI N/AIEA
PTHR18968:SF13Panther ACETOLACTATE SYNTHASE CATALYTIC SUBUNIT, MITOCHONDRIAL JGI N/AIEA
PF00205PFAM Thiamine pyrophosphate enzyme, central domain JGI N/AIEA
PF02775PFAM Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JGI N/AIEA
PF02776PFAM Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JGI N/AIEA
BRANCHED-CHAIN-AA-SYN-PWYSoyCyc9 superpathway of branched chain amino acid biosynthesis Plant Metabolic Network ISS
VALSYN-PWYSoyCyc9 L-valine biosynthesis Plant Metabolic Network ISS
GN7V-54781SoyCyc9-rxn acetolactate synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.13g241000
LocusGene SymbolProtein Name
AHAS3 Acetohydroxy acid synthase gene 3
ALS3 ALS-3 Acetolactate synthase gene 3
ALS3 ALS3 Acetolactate synthase gene 3

Expression Patterns of Glyma.13g241000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g241000
ParalogEvidenceComments
Glyma.15g072500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g241000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g31470 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g241000
>Glyma.13g241000.1 sequence-type=CDS polypeptide=Glyma.13g241000.1.p locus=Glyma.13g241000 ID=Glyma.13g241000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCTATAACTGCCCCAAAAGCTGCGTTCAGCGTCCTCCCTTCATCATCCCATTCCCCGAATCCCTTTGTGCGTTTCGCAATCCCATACAGCCCCCATCACTCCCAGCGCCGTTCTCTCAGAATCTCCAGCGCCCTATCCGATGCAACCACGAAATCCTCCACCGCCGCCGCTGAAGCTTTCGCCTCCCGATTCGGCCTCGATGAGCCCCGCAAGGGCGCCGACATCCTCGTGGAGGCGCTGGAGCGGCAGGGCGTGACGGACGTCTTCGCCTACCCCGGAGGCGCCTCCATGGAGATCCACCAGGCGCTCACTCGCTCATCCTCCATCCGCAACGTCCTCCCTCGCCACGAACAGGGCGGCGTCTTCGCCGCCGAGGGCTACGCCCGCTCTTCCGGCCTCCCCGGCGTCTGCATCGCCACCTCCGGCCCCGGCGCCACCAACCTCGTCTCCGGCCTCGCCGACGCCTTGCTTGACAGCGTCCCCCTCGTCGCCATCACCGGCCAGGTCCCCCGCCGCATGATCGGCACAGACGCCTTCCAAGAAACCCCCATCGTCGAGGTAACACGTTCCATCACTAAGCATAACTATCTCGTTCTCGATGTTGATGACATTCCTAGAATCGTTAATGAAGCGTTTTTCTTAGCCACTTCGGGTAGACCTGGCCCTGTGTTAATTGATATACCTAAAGATATTCAGCAACAGCTTGCGATTCCTAATTGGGATCAACCAATTAGGTTACCTGGTTACACGTCTAGGTTGCCTAAGTCTCCTAATGAGAAACATTTGGAGCTTATTGTGAGGTTGGTTATGGAATCTAAGAAACCGGTTTTGTATGTTGGTGGTGGTTGTTTGAATTCTAGTGAGGAATTGCGGCGTTTTGTCGAGCTCACCGGTGTTCCTGTTGCTAGCACTTTGATGGGTCTTGGTGCTTATCCCATTGCTGATGATAATTCTCTTCAGATGCTTGGGATGCATGGGACTGTTTATGCTAATTATGCTGTGGATAGGGCTGATCTTTTGCTTGCGTTTGGGGTGAGGTTTGATGACCGTGTCACCGGGAAGCTTGAGGCTTTTGCGAGCCGGGCTAAGATTGTTCACATTGATATTGATTCAGCTGAGATTGGGAAGAACAAGCAGCCGCATGTGTCGGTTTGTGCGGATTTGAAGTTGGCATTGAAGGGGATTAATCGCGTGTTAGAGAGCAGAGGGGTTGCAGGGAAGCTTGATTTTAGAGGTTGGAGGGAAGAACTGAATGAGCAGAAGCGAAGGTTTCCTTTGAGTTATAAGACTTTTGAGAAAGAGATTTCTCCTCAGTATGCTATACAGGTTCTTGACGAGTTAACCAATGGGGAAGCTATTGTGAGTACCGGAGTTGGACAGCACCAGATGTGGGCTGCTCAGTTTTACAAGTACAAGAGGCCTAGGCAGTGGTTAACATCCGGTGGTCTTGGTGCTATGGGGTTTGGATTGCCGGCTGCCATTGGTGCGGCTGTGGCTAATCCCGGTGCGGTTGTGGTTGACATTGATGGTGATGGGAGTTTTATGATGAATGTTCAGGAGCTGGCCACCATCAAGGTGGAGAAGCTCCCTGTTAAGATATTGTTGTTGAATAATCAACACTTGGGTATGGTTGTTCAGTGGGAGGATCGGTTCTATAAGTCTAACAGGGCTCACACATATCTGGGAGACCCCTCTAATGAGAATGCCATATACCCCAATATGTTGAAGTTTGCTGATGCTTGTGGGATACCGGCAGCTCGTGTGACCAAGAAAGAAGACCTTAGAGCGGCAATTCAGAAAATGCTGGAGACCCCTGGCCCCTATCTTCTTGATGTCATTGTACCCCATCAAGAGCATGTCTTGCCCATGATTCCTAGCAATGGAACCTTCCAGGACGTGATAACTGAGGGTGATGGCAGGACAAGTTACTGA
Predicted protein sequences of Glyma.13g241000
>Glyma.13g241000.1.p sequence-type=predicted peptide transcript=Glyma.13g241000.1 locus=Glyma.13g241000 ID=Glyma.13g241000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAITAPKAAFSVLPSSSHSPNPFVRFAIPYSPHHSQRRSLRISSALSDATTKSSTAAAEAFASRFGLDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVNEAFFLATSGRPGPVLIDIPKDIQQQLAIPNWDQPIRLPGYTSRLPKSPNEKHLELIVRLVMESKKPVLYVGGGCLNSSEELRRFVELTGVPVASTLMGLGAYPIADDNSLQMLGMHGTVYANYAVDRADLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRVLESRGVAGKLDFRGWREELNEQKRRFPLSYKTFEKEISPQYAIQVLDELTNGEAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPGAVVVDIDGDGSFMMNVQELATIKVEKLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSNENAIYPNMLKFADACGIPAARVTKKEDLRAAIQKMLETPGPYLLDVIVPHQEHVLPMIPSNGTFQDVITEGDGRTSY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo