Glyma.13g240700

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Report for Sequence Feature Glyma.13g240700

Feature Type:	gene_model
Chromosome:	Gm13
Start:	35060887
stop:	35063159
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g240700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04930.1	AT	fatty acid desaturase family protein	JGI	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	JGI	N/A	IEA
GO:0006633	GO-bp	fatty acid biosynthetic process	JGI	N/A	IEA
GO:0030148	GO-bp	sphingolipid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0046513	GO-bp	ceramide biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0005783	GO-cc	endoplasmic reticulum	EnsemblGenomes	N/A	IEA
GO:0005789	GO-cc	endoplasmic reticulum membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016705	GO-mf	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	JGI	N/A	IEA
GO:0042284	GO-mf	sphingolipid delta-4 desaturase activity	EnsemblGenomes	N/A	IEA
KOG2987	KOG	Fatty acid desaturase	JGI	N/A	IEA
PTHR12879	Panther	SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2	JGI	N/A	IEA
PF00487	PFAM	Fatty acid desaturase	JGI	N/A	IEA
PF08557	PFAM	Sphingolipid Delta4-desaturase (DES)	JGI	N/A	IEA
PWY-5129	SoyCyc9	sphingolipid biosynthesis (plants)	Plant Metabolic Network		ISS
GN7V-51798	SoyCyc9-rxn	sphingolipid δ4 desaturase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.13g240700

Locus	Gene Symbol	Protein Name
	DES1.1	sphingolipid delta(4)-desaturase DES1-like

Expression Patterns of Glyma.13g240700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g240700

Paralog	Evidence	Comments
Glyma.15g072800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g240700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g31440	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.13g240700

Limit To All Plant Sequences

>Glyma.13g240700.1 sequence-type=CDS polypeptide=Glyma.13g240700.1.p locus=Glyma.13g240700 ID=Glyma.13g240700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAGAGGAGAAGATCGAGAAGGGGTCGCAGCAGCCGGGGGCTTTTTCTGGTCCTACACCGACGAACCCCATGCCACACGACGTCGTCTGATCCTCTCCAAATACCCTCAAATCAAACAACTCTTTGGCCCCGACCACTCCGCTTTTTTCAAGATTAGTGGAGTTGTTTTGCTTCAGCTTGGTACTGGTGCTTTACTCCATGATGCTGGCTGGCTGAAGATTTTTTTAGTAGCATACTTTTTTGGTTCATTTCTCAACCAAAACCTCTTTTTGGCTATCCATGAGTTGAGTCACAACCTGGCCTTCTCAACTCCAGTCTACAACCGTTGGTTAGGGATTTTTGCCAACCTCCCTGTAGGTGTGCCCATGTCTGTTACCTTCCAAAAGTATCACTTGGAGCACCACCGCTTCCAAGGTGTAGATGGCATTGATATGGATGTCCCTAGCCTCACTGAAGTCCGTCTTGTGAAAAATATGATTGCAAAAACCATTTGGGTCTTTTTACAGCTCTTCTTTTATGCATTTAGACCTCTCTTTCTTAAGCCAAAACCTCCTGGCATTTGGGAATTCATCAACTTCTCTGTTCAGATAGCACTTGATGTGTCGATGGTTTACTTTTTTGGCTGGAAAGCCCTTGCCTATTTGATACTTTCCTCATTTCTTGGTGGTGGGATGCATCCAATGGCTGCTCACTTCATTTCAGAGCATTATGTGTTCAATCCTGACCAGGAGACTTATTCTTACTATGGACCTCTGAATTATCTAGCTTGGCATGTGGGATACCATAATGAACACCATGATTTCCCAAGAATTCCTGGAAACAAGCTTTACAAGGTGAAGGAGATTGCTCCGGAGTTTTATGATAGTTTAGCATCCTACAGATCTTGGAGCCAGATCATTTACATGTACATTATGGATCGAACAGTTGGACCTTTTAGCCGAATGAAGAGAAAATCCAGTAAAGCCGAATAG

Predicted protein sequences of Glyma.13g240700

Limit To All Plant Sequences

>Glyma.13g240700.1.p sequence-type=predicted peptide transcript=Glyma.13g240700.1 locus=Glyma.13g240700 ID=Glyma.13g240700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRGEDREGVAAAGGFFWSYTDEPHATRRRLILSKYPQIKQLFGPDHSAFFKISGVVLLQLGTGALLHDAGWLKIFLVAYFFGSFLNQNLFLAIHELSHNLAFSTPVYNRWLGIFANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDVPSLTEVRLVKNMIAKTIWVFLQLFFYAFRPLFLKPKPPGIWEFINFSVQIALDVSMVYFFGWKALAYLILSSFLGGGMHPMAAHFISEHYVFNPDQETYSYYGPLNYLAWHVGYHNEHHDFPRIPGNKLYKVKEIAPEFYDSLASYRSWSQIIYMYIMDRTVGPFSRMKRKSSKAE*

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