Glyma.13g240500

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Report for Sequence Feature Glyma.13g240500

Feature Type:	gene_model
Chromosome:	Gm13
Start:	35036990
stop:	35044109
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g240500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04955.1	AT	allantoinase	JGI	N/A	IEA
GO:0000256	GO-bp	allantoin catabolic process	EnsemblGenomes	N/A	IEA
GO:0006145	GO-bp	purine nucleobase catabolic process	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0004038	GO-mf	allantoinase activity	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	JGI	N/A	IEA
GO:0016810	GO-mf	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	EnsemblGenomes	N/A	IEA
GO:0050897	GO-mf	cobalt ion binding	EnsemblGenomes	N/A	IEA
KOG2584	KOG	Dihydroorotase and related enzymes	JGI	N/A	IEA
PTHR11647	Panther	AMINOHYDROLASE	JGI	N/A	IEA
PTHR11647:SF4	Panther	ALLANTOINASE	JGI	N/A	IEA
PF01979	PFAM	Amidohydrolase family	JGI	N/A	IEA
P165-PWY	SoyCyc9	superpathway of purines degradation in plants	Plant Metabolic Network		ISS
PWY-5692	SoyCyc9	allantoin degradation to glyoxylate II	Plant Metabolic Network		ISS
PWY-5697	SoyCyc9	allantoin degradation to ureidoglycolate I (urea producing)	Plant Metabolic Network		ISS
PWY-5698	SoyCyc9	allantoin degradation to ureidoglycolate II (ammonia producing)	Plant Metabolic Network		ISS
URDEGR-PWY	SoyCyc9	superpathway of allantoin degradation in plants	Plant Metabolic Network		ISS
GN7V-67867	SoyCyc9-rxn	allantoinase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.13g240500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g240500 not represented in the dataset	Glyma.13g240500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g240500

Paralog	Evidence	Comments
Glyma.15g073000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g240500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g31420	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g240500

Limit To All Plant Sequences

>Glyma.13g240500.2 sequence-type=transcript locus=Glyma.13g240500 ID=Glyma.13g240500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTTTTTCATAAAAAAATAGGATTCAAATAATTTGTTGCCTTAACATTCCAACATAAATTCTTAGACACGCGTCTGGTCTTAAGCTAATCTGACATTTGTAATATGCTGTGTCTGTTGTAATAGTCGTACCATAATGAAACTATAAAAGGAGAGAGAGCACAAATGGTGGAGATAGTGAGAAATGGAGCAGTTTGTATGGAGGGTGTTGCCTTTACTCACAATCCTCATGTCTTTAGTAGTATTCTTCTACTTGCAGGATTCTTACAGGGCCCATTTACATCCTCTCGTAAAGTTACCGCGGAGTAAGTGCAGTCTTCTTCCCCATCGTCATTTCTGGATAACCAGCAAACGCATTGTGACCCCACAAGGGATCATTTCTGGTTCAGTGGAGATAAATGAAGGGAAAATAATATCTGTCATCAAGGGATATAGTAAGCAGGGGAAGTCTAAGCAAGAAAAAATAATTGATTATGGAGGTGCTGTTGTCATGCCTGGCTTGATTGATGTGCACGTACATCTTGATGAGCCAGGAAGAACTGCGTGGGAAGGATTTGATACTGGTACCAGAGCTGCTGCTGCTGGTGGTGTAACAACAGTGGTTGACATGCCTCTGAACAATCACCCTACAACTGTGTCTAGGGAAACACTGAAACTTAAGCTTGAAGCTGCAGAGAATAAAATCTATGTCGATGTTGGATTTTGGGGAGGCCTAATCCCTGAAAATGCACATAATACAAGTATTCTTGAAGGTCTCCTAAGTGCTGGTGTTCTTGGTTTGAAGTCTTTTATGTGTCCTTCAGGAATTAGTGACTTTCCTTTGACTACTATTCACCATATCAAGGAGGGATTGTCTGTGTTAGCAAAATATAGAAGGCCTTTACTTGTGCATTCTGAGATTCAACAACATTCTAAAAAACATTTGGAGCTTAATGATAAAGGTGGTCCACGTGCTTACTTGACCTATCTCCACACTAGGCCACCTTCATGGGAGGAAGCAGCCATTAAAGAACTTGTAGGTGTTACGAAGGACACAAGAAAAGGTGGTCCTTTAGAAGGAGCACATGTTCACGTGGTTCACTTGTCTGATTCAAGTGCTTCCTTAGATCTGATTAAGGAAGCAAAACGTCGTGGTGACAGCATAAGTGTTGAGACTTGTCCCCATTACTTAGCTTTCTCGTCTGAAGAGATACCAAATGGAGATACTCGTTTTAAGTGTTCCCCGCCCATTCGTGATGCATACAACAGAGAAAAATTATGGGAGGCTGTATTAGAGGGACACATTGACCTATTAAGTTCTGATCATTCACCAACTGTGCCTCAACTCAAGCTTCTAGAGGAGGGTGACTTCTTGAAGGCTTGGGGAGGAGTAACATCTTTGCAGTTTGATCTTCCAGTGACGTGGTCTTATGGGAAGAAACATGGACTAACTCTGGAACAGTTGTCGTTATTGTGGAGCAAGAAACCTGCAACATTTGCGGGGTTAGAATCAAAGGGGGCCATTGCAGTTGGAAACCATGCAGATATTGTAGTTTGGAAACCAGAGGTGGAGTTTGACCTGAATGAAGATTATCCTGTTTTCCTTAAACATCCTAGCCTCTCTGCTTATATGGGAAGAAGGCTATCCGGAAAAGTTTTGGAGACTTTTGTCAGAGGAAACCTTGTGTTTAAGAAAGGAAAGCATGCTCCTTCAGCCTGTGGTGTTCCAATTCTAGCCAAATGAATTAGTTAAATATTGGCAGGTTTCTTTCAGATACTAGTTTCTTTGGGGCATAATAAGAGATAGAAGTAGCTGCCGGCAGCATTCTCCTTCTCATCGACTAGTTCATACCATGTATTATTGCAGTTTGGAGTGACTTACTTGAATGTTTATGTAGATTTATAATTTTACAAATTCTAAAGTTTCTGTCTTCACATATCATTGCATGAAATGAATATGCATGTTTCCTAGCTAAGAAACATCATGTTAACATAAACCCGGTCTAATTGTGAGGCAATAAATAGAGAAATAAAAGAAACAGAAACCTTTCATCTATTTATAATCTTGCAAGTAGATTTTTCTTCTTTTAGTGCATTGGAGAGAGAAAAACAGAAGCAGAAACAAAAACTAAAAGTGAAGTTGGCTTACTGGAA

Coding sequences of Glyma.13g240500

Limit To All Plant Sequences

>Glyma.13g240500.1 sequence-type=CDS polypeptide=Glyma.13g240500.1.p locus=Glyma.13g240500 ID=Glyma.13g240500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCAGTTTGTATGGAGGGTGTTGCCTTTACTCACAATCCTCATGTCTTTAGTAGTATTCTTCTACTTGCAGGATTCTTACAGGGCCCATTTACATCCTCTCGTAAAGTTACCGCGGAGTAAGTGCAGTCTTCTTCCCCATCGTCATTTCTGGATAACCAGCAAACGCATTGTGACCCCACAAGGGATCATTTCTGGTTCAGTGGAGATAAATGAAGGGAAAATAATATCTGTCATCAAGGGATATAGTAAGCAGGGGAAGTCTAAGCAAGAAAAAATAATTGATTATGGAGGTGCTGTTGTCATGCCTGGCTTGATTGATGTGCACGTACATCTTGATGAGCCAGGAAGAACTGCGTGGGAAGGATTTGATACTGGTACCAGAGCTGCTGCTGCTGGTGGTGTAACAACAGTGGTTGACATGCCTCTGAACAATCACCCTACAACTGTGTCTAGGGAAACACTGAAACTTAAGCTTGAAGCTGCAGAGAATAAAATCTATGTCGATGTTGGATTTTGGGGAGGCCTAATCCCTGAAAATGCACATAATACAAGTATTCTTGAAGGTCTCCTAAGTGCTGGTGTTCTTGGTTTGAAGTCTTTTATGTGTCCTTCAGGAATTAGTGACTTTCCTTTGACTACTATTCACCATATCAAGGAGGGATTGTCTGTGTTAGCAAAATATAGAAGGCCTTTACTTGTGCATTCTGAGATTCAACAACATTCTAAAAAACATTTGGAGCTTAATGATAAAGGTGGTCCACGTGCTTACTTGACCTATCTCCACACTAGGCCACCTTCATGGGAGGAAGCAGCCATTAAAGAACTTGTAGGTGTTACGAAGGACACAAGAAAAGGTGGTCCTTTAGAAGGAGCACATGTTCACGTGGTTCACTTGTCTGATTCAAGTGCTTCCTTAGATCTGATTAAGGAAGCAAAACGTCGTGGTGACAGCATAAGTGTTGAGACTTGTCCCCATTACTTAGCTTTCTCGTCTGAAGAGATACCAAATGGAGATACTCGTTTTAAGTGTTCCCCGCCCATTCGTGATGCATACAACAGAGAAAAATTATGGGAGGCTGTATTAGAGGGACACATTGACCTATTAAGTTCTGATCATTCACCAACTGTGCCTCAACTCAAGCTTCTAGAGGAGGGTGACTTCTTGAAGGCTTGGGGAGGAGTAACATCTTTGCAGTTTGATCTTCCAGTGACGTGGTCTTATGGGAAGAAACATGGACTAACTCTGGAACAGTTGTCGTTATTGTGGAGCAAGAAACCTGCAACATTTGCGGGGTTAGAATCAAAGGGGGCCATTGCAGTTGGAAACCATGCAGATATTGTAGTTTGGAAACCAGAGGTGGAGTTTGACCTGAATGAAGATTATCCTGTTTTCCTTAAACATCCTAGCCTCTCTGCTTATATGGGAAGAAGGCTATCCGGAAAAGTTTTGGAGACTTTTGTCAGAGGAAACCTTGTGTTTAAGAAAGGAAAGCATGCTCCTTCAGCCTGTGGTGTTCCAATTCTAGCCAAATGA

>Glyma.13g240500.2 sequence-type=CDS polypeptide=Glyma.13g240500.2.p locus=Glyma.13g240500 ID=Glyma.13g240500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCAGTTTGTATGGAGGGTGTTGCCTTTACTCACAATCCTCATGTCTTTAGTAGTATTCTTCTACTTGCAGGATTCTTACAGGGCCCATTTACATCCTCTCGTAAAGTTACCGCGGAGTAAGTGCAGTCTTCTTCCCCATCGTCATTTCTGGATAACCAGCAAACGCATTGTGACCCCACAAGGGATCATTTCTGGTTCAGTGGAGATAAATGAAGGGAAAATAATATCTGTCATCAAGGGATATAGTAAGCAGGGGAAGTCTAAGCAAGAAAAAATAATTGATTATGGAGGTGCTGTTGTCATGCCTGGCTTGATTGATGTGCACGTACATCTTGATGAGCCAGGAAGAACTGCGTGGGAAGGATTTGATACTGGTACCAGAGCTGCTGCTGCTGGTGGTGTAACAACAGTGGTTGACATGCCTCTGAACAATCACCCTACAACTGTGTCTAGGGAAACACTGAAACTTAAGCTTGAAGCTGCAGAGAATAAAATCTATGTCGATGTTGGATTTTGGGGAGGCCTAATCCCTGAAAATGCACATAATACAAGTATTCTTGAAGGTCTCCTAAGTGCTGGTGTTCTTGGTTTGAAGTCTTTTATGTGTCCTTCAGGAATTAGTGACTTTCCTTTGACTACTATTCACCATATCAAGGAGGGATTGTCTGTGTTAGCAAAATATAGAAGGCCTTTACTTGTGCATTCTGAGATTCAACAACATTCTAAAAAACATTTGGAGCTTAATGATAAAGGTGGTCCACGTGCTTACTTGACCTATCTCCACACTAGGCCACCTTCATGGGAGGAAGCAGCCATTAAAGAACTTGTAGGTGTTACGAAGGACACAAGAAAAGGTGGTCCTTTAGAAGGAGCACATGTTCACGTGGTTCACTTGTCTGATTCAAGTGCTTCCTTAGATCTGATTAAGGAAGCAAAACGTCGTGGTGACAGCATAAGTGTTGAGACTTGTCCCCATTACTTAGCTTTCTCGTCTGAAGAGATACCAAATGGAGATACTCGTTTTAAGTGTTCCCCGCCCATTCGTGATGCATACAACAGAGAAAAATTATGGGAGGCTGTATTAGAGGGACACATTGACCTATTAAGTTCTGATCATTCACCAACTGTGCCTCAACTCAAGCTTCTAGAGGAGGGTGACTTCTTGAAGGCTTGGGGAGGAGTAACATCTTTGCAGTTTGATCTTCCAGTGACGTGGTCTTATGGGAAGAAACATGGACTAACTCTGGAACAGTTGTCGTTATTGTGGAGCAAGAAACCTGCAACATTTGCGGGGTTAGAATCAAAGGGGGCCATTGCAGTTGGAAACCATGCAGATATTGTAGTTTGGAAACCAGAGGTGGAGTTTGACCTGAATGAAGATTATCCTGTTTTCCTTAAACATCCTAGCCTCTCTGCTTATATGGGAAGAAGGCTATCCGGAAAAGTTTTGGAGACTTTTGTCAGAGGAAACCTTGTGTTTAAGAAAGGAAAGCATGCTCCTTCAGCCTGTGGTGTTCCAATTCTAGCCAAATGA

Predicted protein sequences of Glyma.13g240500

Limit To All Plant Sequences

>Glyma.13g240500.1.p sequence-type=predicted peptide transcript=Glyma.13g240500.1 locus=Glyma.13g240500 ID=Glyma.13g240500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEQFVWRVLPLLTILMSLVVFFYLQDSYRAHLHPLVKLPRSKCSLLPHRHFWITSKRIVTPQGIISGSVEINEGKIISVIKGYSKQGKSKQEKIIDYGGAVVMPGLIDVHVHLDEPGRTAWEGFDTGTRAAAAGGVTTVVDMPLNNHPTTVSRETLKLKLEAAENKIYVDVGFWGGLIPENAHNTSILEGLLSAGVLGLKSFMCPSGISDFPLTTIHHIKEGLSVLAKYRRPLLVHSEIQQHSKKHLELNDKGGPRAYLTYLHTRPPSWEEAAIKELVGVTKDTRKGGPLEGAHVHVVHLSDSSASLDLIKEAKRRGDSISVETCPHYLAFSSEEIPNGDTRFKCSPPIRDAYNREKLWEAVLEGHIDLLSSDHSPTVPQLKLLEEGDFLKAWGGVTSLQFDLPVTWSYGKKHGLTLEQLSLLWSKKPATFAGLESKGAIAVGNHADIVVWKPEVEFDLNEDYPVFLKHPSLSAYMGRRLSGKVLETFVRGNLVFKKGKHAPSACGVPILAK*

>Glyma.13g240500.2.p sequence-type=predicted peptide transcript=Glyma.13g240500.2 locus=Glyma.13g240500 ID=Glyma.13g240500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEQFVWRVLPLLTILMSLVVFFYLQDSYRAHLHPLVKLPRSKCSLLPHRHFWITSKRIVTPQGIISGSVEINEGKIISVIKGYSKQGKSKQEKIIDYGGAVVMPGLIDVHVHLDEPGRTAWEGFDTGTRAAAAGGVTTVVDMPLNNHPTTVSRETLKLKLEAAENKIYVDVGFWGGLIPENAHNTSILEGLLSAGVLGLKSFMCPSGISDFPLTTIHHIKEGLSVLAKYRRPLLVHSEIQQHSKKHLELNDKGGPRAYLTYLHTRPPSWEEAAIKELVGVTKDTRKGGPLEGAHVHVVHLSDSSASLDLIKEAKRRGDSISVETCPHYLAFSSEEIPNGDTRFKCSPPIRDAYNREKLWEAVLEGHIDLLSSDHSPTVPQLKLLEEGDFLKAWGGVTSLQFDLPVTWSYGKKHGLTLEQLSLLWSKKPATFAGLESKGAIAVGNHADIVVWKPEVEFDLNEDYPVFLKHPSLSAYMGRRLSGKVLETFVRGNLVFKKGKHAPSACGVPILAK*

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