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Report for Sequence Feature Glyma.13g238600

Feature Type:gene_model
Chromosome:Gm13
Start:34896102
stop:34899087
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g238600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26250.1AT 3-ketoacyl-CoA synthase 10 JGI N/AIEA
AT3G52160.1AT 3-ketoacyl-CoA synthase 15 JGI N/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0006633GO-bp fatty acid biosynthetic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008610GO-bp lipid biosynthetic process JGI N/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups JGI N/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups EnsemblGenomesN/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups JGI N/AIEA
PF08392PFAM FAE1/Type III polyketide synthase-like protein JGI N/AIEA
PF08541PFAM 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JGI N/AIEA
PWY-5080SoyCyc9 very long chain fatty acid biosynthesis I Plant Metabolic Network ISS
GN7V-49147SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.13g238600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g238600
ParalogEvidenceComments
Glyma.15g074700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g238600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g31240 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g238600
>Glyma.13g238600.2 sequence-type=transcript locus=Glyma.13g238600 ID=Glyma.13g238600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAATTTCTCATTTTCTTCTACCATATATACCCCAGAGAGCCTTATGGTTTATGACTTTATGTTACACAAATTTTTGCTTCCCGAGGAAGGAAATTGCTAAAGGGAATTTTTGTTATTGAAAAAGAGGATGGAAATTGACATGCTCCTCTTGCATGCAATTTCAATGGGGCTGTAAATCTGCTGCTCAAACGCATTCATGCAAAATGTACCTATTCAGTTTGCATTCTCCTTAAAATCCTTAGCATCATTTACCATGCCAAGCAGCAAGTGTTTCTCCAACTGAGGACACTAATTCCTATATATTTATATCGCATCAAGCTTCTTTGCCTTTCAATAATTTTCTATTTACTTTTTGCACATCTATCCAGCTGCATTAGCTTACTAAAATCCTCCACATATTTGCTTTTTTCCACCATTTTTTTCTTCATTCAACACACTCAGCCTATTGTAACACAATTCTTCCCCCATGTCAAAAGACAGGGAGGAGTTTTCCACCGAGATTGTGCAGAGAGGTGTTGAGAACTCTGGCCCAAATGCTGGCTTTCTTTCTTTCTCTGTGAAAGTGAAGCCTAGACTGCCAGATTTCCTTAGTTCAGTTAATCTAAAATATGTGAAATTGGGTTATGGCTACCTCATTAGCCATCGCTTGTACTTGTTGCTGGCACCACCTCTCCTTGCAGCCTTCATTGCTCGTATTGGAAAGTTCACTTGGCAAGACCTCTATGAGAAATATGGTTTCATTGAGATTCTATTTATATCAGGACTTTTGGGCCTAATGCTATATTTTTATATTGACTTAACACCCGGCTCTACCTATTTGCTTGATTTCTCATGTTTTCGCCCTTCAGATGAATGCAAGGGCATTTATGCAGATCTCTAAGGCAGAGTTCATTGAGTTAGCCAAAAAATCTGGGAATTTCAATGATACTGCCATTGAGTTTCAAGAACGAGTTCTTAAGAAATCTGGCATTGGCGATGAGACCTACCTGCCAAAAAGAGTTTTTCACCCTGGTTACAGAAACTCACTGAATGATGGCAGACAAGAGGTATCCATGGTGATGTTTGGGGCAATTAAGGACCTTCTTGCTGCCACAAAAGTGAAACCAAAAGATATCAGAATCCTGATAGTAAACTGTGGAATACTAAACACCACCCCATCACTCTCATCAATGATAGTAAACCATTTCAAGCTTAGGCATGACATCCATAGCTTCAACCTTGGTGGGATGGGTTGTGCTGCTGGAATTACAGCTATTGATCTTGCTAAAGACCTTCTGGATGCTTATCCAAGAACTTATGCACTTGTAGTTAGCACAGAAGCTGTAAGCTCAACATGGTACAGTGGCAATGATATTGGCATGCTGCTTCCCAATTGCTTCTTCAGAATGGGAGCTGCAGCCATCATGCTCTCAAACTTTCACCTAGATAGATGGTGCGCCAAGTATGAACTCAAACAGCTGGTCCGAACTCACAAAGGGATGAACAACAGAAGCTACAAAAGCATACATCAAAGGGAAGATAGTGAAGGGAGGAAGGGCATTTCTGTGAGTAAAGATGTAATTGAAGTTGGAGGCCATGCACTAAAGGCCAACATCACCACACTAGGTCCACTAGTGCTACCCGTTTCAGAGCAGCTTCACTTCTTCACCAACTTGATCTTCAAGAAAAGGAAAACAAAGCCATACATTCCTGATTACAAGCTGGCGTTCGAGCACATGTGCATTCTGGCAACGAGCAAGAAAGTGCTGGATGAGATTCAGAAGAACTTGGAGCTCACAGAGGAATACATGGAAGCATCAAGGAAGACATTGGAGCGATTTGGCAACACATCAAGCAGCAGCATTTGGTATGAACTGGCTTATCTTGAGTTGAACTCAAGGATCAAAAGGGGTGATCGGGTTTGCCAAATAGCTCTTGGGGCAGGGTTCATGTGTAACAGTGTTGTGTGGAAGGCTCTTAGGAATGTTGGGAGACCCAAGCAGAGTCCTTGGATTGAGGATGATAGCTGAACTAGTAGTAGCAGCTACATAACTCGATTGCATGCTGCCTTAGGTCCATATTATGTACAATGGAAAAAGACATAAATTTAAATAAATTAAAACAAAAGGAGAAACATTAGGACTTGATTGAGAAAGATCACCATGGTTTAAACTTTAGAAGGGCCACGTGTTCATCAAGATCAAGAGGAGTATTAATTAGGAGATTGGAAAATTTAATTTTACAAAATATTTTGAAGAATAAAACGCTGGAAGCTAGTTCTCGAAATTTCTACCAGA
Coding sequences of Glyma.13g238600
>Glyma.13g238600.1 sequence-type=CDS polypeptide=Glyma.13g238600.1.p locus=Glyma.13g238600 ID=Glyma.13g238600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAAAAGACAGGGAGGAGTTTTCCACCGAGATTGTGCAGAGAGGTGTTGAGAACTCTGGCCCAAATGCTGGCTTTCTTTCTTTCTCTGTGAAAGTGAAGCCTAGACTGCCAGATTTCCTTAGTTCAGTTAATCTAAAATATGTGAAATTGGGTTATGGCTACCTCATTAGCCATCGCTTGTACTTGTTGCTGGCACCACCTCTCCTTGCAGCCTTCATTGCTCGTATTGGAAAGTTCACTTGGCAAGACCTCTATGAGAAATATGGTTTCATTGAGATTCTATTTATATCAGGACTTTTGGGCCTAATGCTATATTTTTATATTGACTTAACACCCGGCTCTACCTATTTGCTTGATTTCTCATGTTTTCGCCCTTCAGATGAATGCAAGATCTCTAAGGCAGAGTTCATTGAGTTAGCCAAAAAATCTGGGAATTTCAATGATACTGCCATTGAGTTTCAAGAACGAGTTCTTAAGAAATCTGGCATTGGCGATGAGACCTACCTGCCAAAAAGAGTTTTTCACCCTGGTTACAGAAACTCACTGAATGATGGCAGACAAGAGGTATCCATGGTGATGTTTGGGGCAATTAAGGACCTTCTTGCTGCCACAAAAGTGAAACCAAAAGATATCAGAATCCTGATAGTAAACTGTGGAATACTAAACACCACCCCATCACTCTCATCAATGATAGTAAACCATTTCAAGCTTAGGCATGACATCCATAGCTTCAACCTTGGTGGGATGGGTTGTGCTGCTGGAATTACAGCTATTGATCTTGCTAAAGACCTTCTGGATGCTTATCCAAGAACTTATGCACTTGTAGTTAGCACAGAAGCTGTAAGCTCAACATGGTACAGTGGCAATGATATTGGCATGCTGCTTCCCAATTGCTTCTTCAGAATGGGAGCTGCAGCCATCATGCTCTCAAACTTTCACCTAGATAGATGGTGCGCCAAGTATGAACTCAAACAGCTGGTCCGAACTCACAAAGGGATGAACAACAGAAGCTACAAAAGCATACATCAAAGGGAAGATAGTGAAGGGAGGAAGGGCATTTCTGTGAGTAAAGATGTAATTGAAGTTGGAGGCCATGCACTAAAGGCCAACATCACCACACTAGGTCCACTAGTGCTACCCGTTTCAGAGCAGCTTCACTTCTTCACCAACTTGATCTTCAAGAAAAGGAAAACAAAGCCATACATTCCTGATTACAAGCTGGCGTTCGAGCACATGTGCATTCTGGCAACGAGCAAGAAAGTGCTGGATGAGATTCAGAAGAACTTGGAGCTCACAGAGGAATACATGGAAGCATCAAGGAAGACATTGGAGCGATTTGGCAACACATCAAGCAGCAGCATTTGGTATGAACTGGCTTATCTTGAGTTGAACTCAAGGATCAAAAGGGGTGATCGGGTTTGCCAAATAGCTCTTGGGGCAGGGTTCATGTGTAACAGTGTTGTGTGGAAGGCTCTTAGGAATGTTGGGAGACCCAAGCAGAGTCCTTGGATTGAGGATGATAGCTGA

>Glyma.13g238600.2 sequence-type=CDS polypeptide=Glyma.13g238600.2.p locus=Glyma.13g238600 ID=Glyma.13g238600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCAAGGGCATTTATGCAGATCTCTAAGGCAGAGTTCATTGAGTTAGCCAAAAAATCTGGGAATTTCAATGATACTGCCATTGAGTTTCAAGAACGAGTTCTTAAGAAATCTGGCATTGGCGATGAGACCTACCTGCCAAAAAGAGTTTTTCACCCTGGTTACAGAAACTCACTGAATGATGGCAGACAAGAGGTATCCATGGTGATGTTTGGGGCAATTAAGGACCTTCTTGCTGCCACAAAAGTGAAACCAAAAGATATCAGAATCCTGATAGTAAACTGTGGAATACTAAACACCACCCCATCACTCTCATCAATGATAGTAAACCATTTCAAGCTTAGGCATGACATCCATAGCTTCAACCTTGGTGGGATGGGTTGTGCTGCTGGAATTACAGCTATTGATCTTGCTAAAGACCTTCTGGATGCTTATCCAAGAACTTATGCACTTGTAGTTAGCACAGAAGCTGTAAGCTCAACATGGTACAGTGGCAATGATATTGGCATGCTGCTTCCCAATTGCTTCTTCAGAATGGGAGCTGCAGCCATCATGCTCTCAAACTTTCACCTAGATAGATGGTGCGCCAAGTATGAACTCAAACAGCTGGTCCGAACTCACAAAGGGATGAACAACAGAAGCTACAAAAGCATACATCAAAGGGAAGATAGTGAAGGGAGGAAGGGCATTTCTGTGAGTAAAGATGTAATTGAAGTTGGAGGCCATGCACTAAAGGCCAACATCACCACACTAGGTCCACTAGTGCTACCCGTTTCAGAGCAGCTTCACTTCTTCACCAACTTGATCTTCAAGAAAAGGAAAACAAAGCCATACATTCCTGATTACAAGCTGGCGTTCGAGCACATGTGCATTCTGGCAACGAGCAAGAAAGTGCTGGATGAGATTCAGAAGAACTTGGAGCTCACAGAGGAATACATGGAAGCATCAAGGAAGACATTGGAGCGATTTGGCAACACATCAAGCAGCAGCATTTGGTATGAACTGGCTTATCTTGAGTTGAACTCAAGGATCAAAAGGGGTGATCGGGTTTGCCAAATAGCTCTTGGGGCAGGGTTCATGTGTAACAGTGTTGTGTGGAAGGCTCTTAGGAATGTTGGGAGACCCAAGCAGAGTCCTTGGATTGAGGATGATAGCTGA
Predicted protein sequences of Glyma.13g238600
>Glyma.13g238600.1.p sequence-type=predicted peptide transcript=Glyma.13g238600.1 locus=Glyma.13g238600 ID=Glyma.13g238600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKDREEFSTEIVQRGVENSGPNAGFLSFSVKVKPRLPDFLSSVNLKYVKLGYGYLISHRLYLLLAPPLLAAFIARIGKFTWQDLYEKYGFIEILFISGLLGLMLYFYIDLTPGSTYLLDFSCFRPSDECKISKAEFIELAKKSGNFNDTAIEFQERVLKKSGIGDETYLPKRVFHPGYRNSLNDGRQEVSMVMFGAIKDLLAATKVKPKDIRILIVNCGILNTTPSLSSMIVNHFKLRHDIHSFNLGGMGCAAGITAIDLAKDLLDAYPRTYALVVSTEAVSSTWYSGNDIGMLLPNCFFRMGAAAIMLSNFHLDRWCAKYELKQLVRTHKGMNNRSYKSIHQREDSEGRKGISVSKDVIEVGGHALKANITTLGPLVLPVSEQLHFFTNLIFKKRKTKPYIPDYKLAFEHMCILATSKKVLDEIQKNLELTEEYMEASRKTLERFGNTSSSSIWYELAYLELNSRIKRGDRVCQIALGAGFMCNSVVWKALRNVGRPKQSPWIEDDS*

>Glyma.13g238600.2.p sequence-type=predicted peptide transcript=Glyma.13g238600.2 locus=Glyma.13g238600 ID=Glyma.13g238600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNARAFMQISKAEFIELAKKSGNFNDTAIEFQERVLKKSGIGDETYLPKRVFHPGYRNSLNDGRQEVSMVMFGAIKDLLAATKVKPKDIRILIVNCGILNTTPSLSSMIVNHFKLRHDIHSFNLGGMGCAAGITAIDLAKDLLDAYPRTYALVVSTEAVSSTWYSGNDIGMLLPNCFFRMGAAAIMLSNFHLDRWCAKYELKQLVRTHKGMNNRSYKSIHQREDSEGRKGISVSKDVIEVGGHALKANITTLGPLVLPVSEQLHFFTNLIFKKRKTKPYIPDYKLAFEHMCILATSKKVLDEIQKNLELTEEYMEASRKTLERFGNTSSSSIWYELAYLELNSRIKRGDRVCQIALGAGFMCNSVVWKALRNVGRPKQSPWIEDDS*






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