Glyma.13g230300

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g230300

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34225739
stop:	34227982
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g230300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29140.1	AT	Pollen Ole e 1 allergen and extensin family protein	JGI	N/A	IEA
GO:0005615	GO-cc	extracellular space	EnsemblGenomes	N/A	IEA
PF01190	PFAM	Pollen proteins Ole e I like	JGI	N/A	IEA

Expression Patterns of Glyma.13g230300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g230300

Paralog	Evidence	Comments
Glyma.15g082300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g230300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g30340	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g230300

Limit To All Plant Sequences

>Glyma.13g230300.2 sequence-type=transcript locus=Glyma.13g230300 ID=Glyma.13g230300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTCCTTTAACACAGTAGTACATTCTCCTTTGAACCAAACCCTCATCCAAATTAACCAGCAAGCAAGCAGTATTTACAATGGCAAAAACTACAATCATCATCCTTGCCTCCACCCTTTGCTTCTTATCCTTCCTAGGCTCCGCTTATGCCCGAGACCGCTTCATGGTGGAGGGCACCGTTTACTGTGACACGTGTCGCGTCCAATTCCTCACCAAGTTGTCTGAGTTCCTTGAAGGAGCTACCGTGCGTGTGGTGTGTTCACAAGTTGATAATGCGAAGAACGTGACATTCAGCAAAGAGGCAGTGACAGATGCATCAGGGTCATACAAAGTGGAGGTGGACGGAGACCACGAAGAAGACACGTGTGAGGTTACCCTCTTGAAGAGTCCAAGAGCAGACTGCTCCGAGGTTGATCAAGAGTCTCACCTTCAGCAAGCTGCAAGGATCAGCATCACCAAAAACAATGGAATTGTGTCCCCAATTCGCCAGGCCAACCCTCTTGGTTTCCTCAAGAAGGATCGTCTCCCTGGCTGCTTGGACCTCCTCAAGGAGCTTGGAATCAATGAAGATGGCACCCTCATCGCTTGAACAACCACGTTAAAGGGATCGATATAGCCATATAGGTATCCCTTTTTTTGTTATATTAATTATCTATTTAAGGATCTAGGGCTCAATCTTTTTATTTTCCTTTTCCCATTTTATATTTAATTAGGATCAAGATGTGAGTTTTAATAATCTATGAGCTTGTGCCTTTGGGGGGAGTTTTTCTAGACTTTAGAAGTCTCTTGAAGGATCCTCTCACTTGTACAACTCTCTCATTTTCGTATTTGGTGGAGTTTATATCACTAATCTCCGGCTGTTTCAATTCCATTCCTTTTGGATCATCTAATTTTATTTCAGCTCTATAGAACAAAAATAAGAAATAAT

Coding sequences of Glyma.13g230300

Limit To All Plant Sequences

>Glyma.13g230300.1 sequence-type=CDS polypeptide=Glyma.13g230300.1.p locus=Glyma.13g230300 ID=Glyma.13g230300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAAAACTACAATCATCATCCTTGCCTCCACCCTTTGCTTCTTATCCTTCCTAGGCTCCGCTTATGCCCGAGACCGCTTCATGGTGGAGGGCACCGTTTACTGTGACACGTGTCGCGTCCAATTCCTCACCAAGTTGTCTGAGTTCCTTGAAGGAGCTACCGTGCGTGTGGTGTGTTCACAAGTTGATAATGCGAAGAACGTGACATTCAGCAAAGAGGCAGTGACAGATGCATCAGGGTCATACAAAGTGGAGGTGGACGGAGACCACGAAGAAGACACGTGTGAGGTTACCCTCTTGAAGAGTCCAAGAGCAGACTGCTCCGAGGTTGATCAAGAGTCTCACCTTCAGCAAGCTGCAAGGATCAGCATCACCAAAAACAATGGAATTGTGTCCCCAATTCGCCAGGCCAACCCTCTTGGTTTCCTCAAGAAGGATCGTCTCCCTGGCTGCTTGGACCTCCTCAAGGAGCTTGGAATCAATGAAGATGGCACCCTCATCGCTTGA

>Glyma.13g230300.2 sequence-type=CDS polypeptide=Glyma.13g230300.2.p locus=Glyma.13g230300 ID=Glyma.13g230300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAAAACTACAATCATCATCCTTGCCTCCACCCTTTGCTTCTTATCCTTCCTAGGCTCCGCTTATGCCCGAGACCGCTTCATGGTGGAGGGCACCGTTTACTGTGACACGTGTCGCGTCCAATTCCTCACCAAGTTGTCTGAGTTCCTTGAAGGAGCTACCGTGCGTGTGGTGTGTTCACAAGTTGATAATGCGAAGAACGTGACATTCAGCAAAGAGGCAGTGACAGATGCATCAGGGTCATACAAAGTGGAGGTGGACGGAGACCACGAAGAAGACACGTGTGAGGTTACCCTCTTGAAGAGTCCAAGAGCAGACTGCTCCGAGGTTGATCAAGAGTCTCACCTTCAGCAAGCTGCAAGGATCAGCATCACCAAAAACAATGGAATTGTGTCCCCAATTCGCCAGGCCAACCCTCTTGGTTTCCTCAAGAAGGATCGTCTCCCTGGCTGCTTGGACCTCCTCAAGGAGCTTGGAATCAATGAAGATGGCACCCTCATCGCTTGA

Predicted protein sequences of Glyma.13g230300

Limit To All Plant Sequences

>Glyma.13g230300.1.p sequence-type=predicted peptide transcript=Glyma.13g230300.1 locus=Glyma.13g230300 ID=Glyma.13g230300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKTTIIILASTLCFLSFLGSAYARDRFMVEGTVYCDTCRVQFLTKLSEFLEGATVRVVCSQVDNAKNVTFSKEAVTDASGSYKVEVDGDHEEDTCEVTLLKSPRADCSEVDQESHLQQAARISITKNNGIVSPIRQANPLGFLKKDRLPGCLDLLKELGINEDGTLIA*

>Glyma.13g230300.2.p sequence-type=predicted peptide transcript=Glyma.13g230300.2 locus=Glyma.13g230300 ID=Glyma.13g230300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKTTIIILASTLCFLSFLGSAYARDRFMVEGTVYCDTCRVQFLTKLSEFLEGATVRVVCSQVDNAKNVTFSKEAVTDASGSYKVEVDGDHEEDTCEVTLLKSPRADCSEVDQESHLQQAARISITKNNGIVSPIRQANPLGFLKKDRLPGCLDLLKELGINEDGTLIA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain