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Report for Sequence Feature Glyma.13g229200

Feature Type:gene_model
Chromosome:Gm13
Start:34138528
stop:34142839
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g229200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64270.1AT splicing factor, putative JGI N/AIEA
GO:0000245GO-bp spliceosomal complex assembly EnsemblGenomesN/AIEA
GO:0005686GO-cc U2 snRNP EnsemblGenomesN/AIEA
GO:0005689GO-cc U12-type spliceosomal complex EnsemblGenomesN/AIEA
GO:0071004GO-cc U2-type prespliceosome EnsemblGenomesN/AIEA
GO:0071013GO-cc catalytic step 2 spliceosome EnsemblGenomesN/AIEA
GO:0003729GO-mf mRNA binding EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
KOG0213 KOG Splicing factor 3b, subunit 1 JGI N/AIEA
PTHR12097Panther SPLICING FACTOR 3B, SUBUNIT 1-RELATED JGI N/AIEA
PF02985PFAM HEAT repeat JGI N/AIEA
PF08920PFAM Splicing factor 3B subunit 1 JGI N/AIEA

Expression Patterns of Glyma.13g229200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g229200 not represented in the dataset
Glyma.13g229200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g229200
ParalogEvidenceComments
Glyma.15g083300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g229200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g30196 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g229200
>Glyma.13g229200.1 sequence-type=CDS polypeptide=Glyma.13g229200.1.p locus=Glyma.13g229200 ID=Glyma.13g229200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAAAATCATCTCGCCGGAGCGCCACGACCCCTTCGCCGCCGGCGAGAAGACCCCGGACCCCTCTGTTAGGACCTACGCCGATATCATGCGCGAGGAGGCGCTCAAGAGGGAGAAGGAGGAGACTCTGAAAGCCATCGCTAAGAAGAAGAAGGAGGAAGAGGAAGCAGCGAAGGATGCTCCGCAGCAACAGCAGCAGAAGAGGAGGAACCGCTGGGACCAGTCTCAGGATGACGGTGGTGCCGCGGCGGCGGCGGCGGCGAAGAAGGCCAAAACCTCTGATTGGGACATGCCGGACACCACTCCGGGGCGGTGGGATGCCACCCCGACGCCGGGGAGGGTTACCGATGCGACACCGGGGAGGAGGAACCGGTGGGATGAAACTCCCACTCCTGGTAGAGTTGCGGATTCTGATGCAACACCTGCAGGTGGTGCTACACCGGGTGCTACACCTGCTGGTATGACTTGGGATGCTACTCCTAAGCTTTCTGGGATGGCTACTCCAACTCCCAAGAGGCAAAGGTCGAGGTGGGATGAGACTCCCGCTACTATGGGAAGTGCTACTCCGTTGCCAGGTGCTACTCCTGCTGCTGCTTATACTCCCGGTGTTACTCCTGTTGGTGGAATTGAACTTGCTACTCCAACCCCTGGGGCTTTACAAGGCTCCATTACTCCGGAACAATACAATTTGTTGAGGTGGGAGAGGGATATTGAAGAGAGGAATCGCCCCTTGACTGATGAGGAGCTTGATGCTATGTTTCCTCAAGAGGGGTATAAGGTTTTGGATCCCCCCGCATCCTATGTGCCCATTAGGACTCCAGCGAGGAAGCTTCTTGCCACTCCTACGCCTTTGGGGACTCCTCTTTATCAAATTCCTGAGGAGAATCGCGGGCAGCAGTTTGATGTTCCCAAGGAAGCACCCGGTGGGTTGCCGTTTATGAAGCCAGAGGATTACCAGTACTTTGGGGCACTGTTGAATGAGGAGAATGAAGAGGAGTTGTCTCCAGATGAGCAGAAGGAAAGGAAGATTATGAAGCTTCTGCTTAAAGTGAAGAATGGGACGCCACCGCAGAGGAAGACTGCATTGAGGCAGCTTACGGATAAGGCTCGCGAGTTTGGTGCTGGGCCGTTGTTTAACCGGATTTTGCCATTGCTCATGCAGCCTACCCTGGAGGATCAAGAGAGGCATCTTTTGGTTAAGGTAATTGACAGGGTTTTGTATAAGTTAGACGAATTGGTTCGGCCTTTTGTGCATAAGATTCTTGTTGTTATTGAACCCTTGTTGATTGATGAAGACTACTATGCGCGTGTGGAGGGCAGAGAAATAATATCTAATCTTAGTAAAGCTGCTGGGCTGGCTACTATGATTGCTGCTATGCGACCTGATATTGATAACATTGATGAATATGTTAGGAACACTACTGCTAGGGCCTTTAGTGTTGTTGCTTCTGCACTTGGTATTCCTGCACTGTTGCCATTCTTGAAGGCTGTGTGTCAGAGTAAGAAATCATGGCAAGCTAGGCACACAGGGATTAAGATCGTGCAGCAGATCGCCATTTTAATTGGTTGTGCGGTGTTGCCACATCTGAGATCTCTTGTGGAAATTATAGAGCATGGTCTGAATGATGAGAATCAGAAGGTGAGAACGATCTCTGCATTGTCTCTTGCTGCTCTTGCTGAGGCTGCTGCTCCTTATGGTATTGAAAGCTTTGACTCTGTTTTGAAGCCACTGTGGAAGGGTATTAGGCAACACCGTGGGAAGGTGTTGGCTGCATTTCTGAAGGCAATTGGGTTTATTATTCCGTTGATGGAAGCCCTGTATGCCAGTTACTATACTAAGGAAGTCATGCTCATTCTGATTCGTGAATTCCAGTCACCTGATGAAGAAATGAAGAAAATTGTTCTGAAAGTGGTGAAGCAGTGTGTGAGCACTGAGGGTGTGGAAGCTGAATATATTAGAAATGATATCCTACCTGAGTTTTTCAAGAATTTCTGGGTTAGGAGGATGGCTCTAGATAGAAGAAACTATAAGCAACTTGTGGAGACTACTGTAGAGATAGCAAACAAAGTTGGTGTTGCAGATATTGTTGGTAGAATTGTTGAGGATCTTAAAGATGAGAGTGAACCTTATAGGCGTATGGTTATGGAGACTATTGAGAAGGTGGTTACTAACCTGGGGGCATCTGATATTGATGCACGGCTGGAAGAGCTTCTGATTGATGGTATTCTTTATGCCTTCCAAGAGCAGACCAGTGACGATGCTAATGTGATGCTTAATGGGTTTGGTGCAGTCGTAAACTCACTTGGGCAGAGAGTGAAGCCATATCTTCCTCAGATTTGTGGTACTATAAAGTGGCGATTGAACAACAAGAGTGCAAAGGTGAGACAGCAAGCGGCAGATCTCATTTCAAGGATTGCTGTTGTCATGAAGCAGTGCCATGAGGAACAATTGATGGGTCATCTTGGTGTTGTCTTGTATGAGTATTTGGGAGAAGAGTATCCTGAAGTTTTAGGATCAATTTTGGGAGCTCTCAAGTCAATTGTCAATGTTATCGGTATGACAAAGATGACTCCACCTATTAAGGATTTACTTCCCAGGTTGACTCCGATTTTGAAGAATAGGCACGAGAAAGTCCAGGAGAATTGTATTGACCTTGTTGGTAGGATTGCTGACCGTGGAGCTGAGTTTGTACCAGCAAGAGAGTGGATGAGGATTTGTTTTGAGTTGCTTGAGATGCTCAAAGCACACAAGAAGGGAATCCGTAGAGCTACAGTGAACACTTTTGGATATATTGCAAAAGCCATTGGACCACAAGATGTCTTGGCAACCCTATTGAATAATCTCAAGGTGCAGGAGAGGCAGAACCGTGTTTGCACAACCGTAGCCATTGCAATTGTTGCAGAAACATGTTCACCCTTCACAGTTTTACCAGCATTGATGAACGAGTATCGCGTGCCGGAGCTTAATGTGCAAAATGGTGTGCTCAAGTCCCTCTCTTTCCTATTTGAGTACATTGGTGAAATGGGAAAGGATTACATCTATGCTGTGACTCCTTTGCTTGAAGATGCACTCATGGACAGGGATTTGGTTCACAGGCAGACAGCTGCTTCTGCTGTGAAGCATATGGCTCTGGGAGTGGCTGGTTTAGGTTGTGAGGATGCACTGGTTCATTTGCTGAATTATGTCTGGCCAAACATTTTTGAAACTTCTCCTCATGTGATTAATGCTGTGATGGAAGCAATTGAAGGGATGAGGGTAGCGTTGGGAGCAGCTGTTGTACTGAATTATTGTCTACAAGGACTCTTCCACCCTGCACGAAAAGTTAGGGAGGTATATTGGAAGATCTACAACTCTCTCTATATTGGAGCCCAGGATGCTCTTGTAGCATCGTACCCTGCCTTGGAGGATGAGCAGAACAATGTTTACAGCAGGCCAGAGTTAATGATGTTCATCTAG
Predicted protein sequences of Glyma.13g229200
>Glyma.13g229200.1.p sequence-type=predicted peptide transcript=Glyma.13g229200.1 locus=Glyma.13g229200 ID=Glyma.13g229200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKIISPERHDPFAAGEKTPDPSVRTYADIMREEALKREKEETLKAIAKKKKEEEEAAKDAPQQQQQKRRNRWDQSQDDGGAAAAAAAKKAKTSDWDMPDTTPGRWDATPTPGRVTDATPGRRNRWDETPTPGRVADSDATPAGGATPGATPAGMTWDATPKLSGMATPTPKRQRSRWDETPATMGSATPLPGATPAAAYTPGVTPVGGIELATPTPGALQGSITPEQYNLLRWERDIEERNRPLTDEELDAMFPQEGYKVLDPPASYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEENEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTISALSLAALAEAAAPYGIESFDSVLKPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYASYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRNDILPEFFKNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVASYPALEDEQNNVYSRPELMMFI*






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