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Report for Sequence Feature Glyma.13g225700

Feature Type:gene_model
Chromosome:Gm13
Start:33823702
stop:33825775
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g225700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18880.1AT heat shock transcription factor A4A JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
KOG0627 KOG Heat shock transcription factor JGI N/AIEA
PTHR10015Panther HEAT SHOCK TRANSCRIPTION FACTOR JGI N/AIEA
PTHR10015:SF7Panther JGI N/AIEA
PF00447PFAM HSF-type DNA-binding JGI N/AIEA

Proteins Associated with Glyma.13g225700
LocusGene SymbolProtein Name
HSF-29 heat stress transcription factor 29

Expression Patterns of Glyma.13g225700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g225700
ParalogEvidenceComments
Glyma.15g086400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g225700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g29760 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g225700
>Glyma.13g225700.1 sequence-type=CDS polypeptide=Glyma.13g225700.1.p locus=Glyma.13g225700 ID=Glyma.13g225700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGAGGAAGCTCAGGGCAGTTCTAGTTCCCTGCCACCTTTCCTCACCAAGATTTATGAGATGGTGGATGATCCTTCAACTAATTCCATTGTTTCATGGAGTGCCACCAATAGGAGTTTCATTGTTTGGAACCCACCAGAGTTTTCAAGGGATTTGTTACCCAAATACTTTAAGCACAACAACTTTTCCAGTTTCATCAGGCAGCTCAACACTTACGGCTTTAGAAAGATTGATCCTGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAGCCACATCTTTTGAAGAACATCCATAGGCGCAAACCTGTCCATAGCCATTCTTTGCAGAATATCCAGGGTCAAGGGGTTTCTTCGCTGACTGAATCAGAAAGGCAGAGTTTTAAGGATGAGATAGAGAAGCTTAAACATGAAAAAGAACAACTTCTTCGGGAGTTAGAGATGCATGAACAGGAGTGGAAAATGTATGAGGTACAATTACAACACTCCAATGATCGTTTGGAAAAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTCTCTCAAGTGTTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCTGTTGACAGAAAACATGGATAGAAAACGGAGGTTGCCAAGAAGTGGTCTCTTTAGTGATGACGCTAGCATTGAAGATCATATGGAAACTTCCCAAGTATTACCAAGGGAAAATGCAGATGGTGCTTCTATTTTCTCATCGAGCACAGAACGGTTGGATCTCCTTGAGTCATCCATGACGTTTTGGGAGAATATTACACATGATGTTGGTGACGTCTTTGTTCAAAGTCATTTAAACTTGGATTTTGATGAATCTACAAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGAAGTTGAAGATCAGCCTAAGTCACATGGAATCAACGTGAGTTCTGAGCCAGCTGTAGTTGCGGCTCCTGATCTTGATGCATCAAAAGAACAACCTGTCGAAACAGCTCCTCTGACTACTGGTGTTAATGACATATTCTGGGAACGATTCTTGACAGAGAATCCTGGTTCGTCAGAAATGCAGGAAGCTCAGTCTGAAAGAGAGGATTCTGATGGCAGAAGTAATGCCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG
Predicted protein sequences of Glyma.13g225700
>Glyma.13g225700.1.p sequence-type=predicted peptide transcript=Glyma.13g225700.1 locus=Glyma.13g225700 ID=Glyma.13g225700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMEEAQGSSSSLPPFLTKIYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGVSSLTESERQSFKDEIEKLKHEKEQLLRELEMHEQEWKMYEVQLQHSNDRLEKLEKKQENLVSSVSQVLQKPGIALNLLLLTENMDRKRRLPRSGLFSDDASIEDHMETSQVLPRENADGASIFSSSTERLDLLESSMTFWENITHDVGDVFVQSHLNLDFDESTSCADSPAISCVQLEVEDQPKSHGINVSSEPAVVAAPDLDASKEQPVETAPLTTGVNDIFWERFLTENPGSSEMQEAQSEREDSDGRSNAKFWWNIRNVNNPPEQMGHS*






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