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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22920.2 | AT | serine carboxypeptidase-like 12 | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | JGI | N/A | IEA |
| GO:0019748 | GO-bp | secondary metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0004185 | GO-mf | serine-type carboxypeptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0004185 | GO-mf | serine-type carboxypeptidase activity | JGI | N/A | IEA |
| GO:0016747 | GO-mf | transferase activity, transferring acyl groups other than amino-acyl groups | EnsemblGenomes | N/A | IEA |
| KOG1282 | KOG | Serine carboxypeptidases (lysosomal cathepsin A) | JGI | N/A | IEA |
| PTHR11802 | Panther | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | JGI | N/A | IEA |
| PTHR11802:SF7 | Panther | JGI | N/A | IEA | |
| PF00450 | PFAM | Serine carboxypeptidase | JGI | N/A | IEA |
| PWY-7280 | SoyCyc9 | ternatin C3 biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-58618 | SoyCyc9-rxn | delphinidin 3-(6"-malonyl)glucoside-3',5'-diglucoside-6"'-p-coumaroyltransferase | Plant Metabolic Network | ISS |
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Glyma.13g221900 not represented in the dataset |
Glyma.13g221900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g090300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g29370 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g221900.1 sequence-type=CDS polypeptide=Glyma.13g221900.1.p locus=Glyma.13g221900 ID=Glyma.13g221900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAAATTTTAGTTCAAGTTACATTTATTACTGGGTTCTACTACCCTTTTTTTTGTTATCACAATTCTCCTTTCAACTTGCATGGTGTGGCTCCATAGTAAAGTTCCTTCCTGGATTCAAGGGACCCCTTCCTTTTGTACTTGAAACCGGGTATGTGGGAGTGGGTGAATCAGAGGATGTGCAGGCATTCTACTACTTCATTGAGTCAGAGAACAATCCCAAGAAAGATCCTCTCATGCTTTGGCTCACTGGTGGCCCTGGTTGCTCAGCCTTATCTGGACTTGTGTTTGAAATAGGACCACTTACATTCAAATATGAGGAATACAATGGGAGCCTGCCCAATTTGGTCTTGAGGCCACACTCATGGACAAAGGTTAGTAGCATTATATTTGTAGACTTGCCTGTTTCCACGGGCTTCACTTATGCCACAACAGAGTTTGCTGCTCAACGAAGCGACTGGATTCTAGTTCACCAAGTCCATCAGTTTCTTAGGAAGTGGTTGATTGATCATCCAAATTTTTCGTCAAATGAAGTTTACATTGGTGGCGATTCATACTCTGGCATTCCTATTCCAGTGATTGTTCAAGAAATTTCACGAGGAAATGAAAAAGGGCTCCAACCATGGATAAATCTCCAGGGATACCTGCTGGGAAATGCAGCAACAACTCGAAGGGAAAAAAACTATCAAATTCCCTTCGCTCATGGAATGGGACTTATTTCTGATGAACTATATGGGTCACTGCAAAAAAATTGTAAAGAAGAGTACATAAATGTAGACACCAGAAATGTATTATGTTCTAGAGATATCGAGTCATTCAATGAGGTTACATCAGGACTTAATTCAGCCCATATTTTGGACCCGTCATGTGAGTGGCTTGATACTGAAACATCTTGGAGGAGATCTCTACTTAAGAAATATCCCAGAAAGAATTTCCTTAATACTCACCTCAAATTGGCACCCTTAAACTGTCGGAGTTATGTATACTTCCTCTGCGGTTATTGGGCCAATGATGATAATGTTCGCACTGCACTGCACATCCGTAAGGGAAGTATAGGAAAATGGCATCGTTGTACCTTCGATATACCTAACAAGAAGGATATCTCAAGCAGCTATGAGTATCATGTAAATCTCAGTAGAAAAGGCTACCGTTCGCTGATATACAGTGGCGATCATGACATGACAATTCCTTTCTTGGCAACTCAAGCATGGATAAGATCTTTAAACTACTCCATTGTGGATGAGTGGAGGCAATGGCATACAAATGGTCAAGTTGCAGGATACACAAGGACTTACTCCAATCGGATGACATTTGCAACTGTGAAGGGAGGAGGCCACACAGCTCCGGAGTACAAGCCTGATGAATGCTTTGCCATGTTCAGTAGGTGGATATCTAACAGTGCTTTGTAG
>Glyma.13g221900.1.p sequence-type=predicted peptide transcript=Glyma.13g221900.1 locus=Glyma.13g221900 ID=Glyma.13g221900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MENFSSSYIYYWVLLPFFLLSQFSFQLAWCGSIVKFLPGFKGPLPFVLETGYVGVGESEDVQAFYYFIESENNPKKDPLMLWLTGGPGCSALSGLVFEIGPLTFKYEEYNGSLPNLVLRPHSWTKVSSIIFVDLPVSTGFTYATTEFAAQRSDWILVHQVHQFLRKWLIDHPNFSSNEVYIGGDSYSGIPIPVIVQEISRGNEKGLQPWINLQGYLLGNAATTRREKNYQIPFAHGMGLISDELYGSLQKNCKEEYINVDTRNVLCSRDIESFNEVTSGLNSAHILDPSCEWLDTETSWRRSLLKKYPRKNFLNTHLKLAPLNCRSYVYFLCGYWANDDNVRTALHIRKGSIGKWHRCTFDIPNKKDISSSYEYHVNLSRKGYRSLIYSGDHDMTIPFLATQAWIRSLNYSIVDEWRQWHTNGQVAGYTRTYSNRMTFATVKGGGHTAPEYKPDECFAMFSRWISNSAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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