Glyma.13g216800

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Report for Sequence Feature Glyma.13g216800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32981447
stop:	32986103
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g216800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18570.1	AT	GTP1/OBG family protein	JGI	N/A	IEA
GO:0015684	GO-bp	ferrous iron transport	JGI	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	JGI	N/A	IEA
GO:0000287	GO-mf	magnesium ion binding	EnsemblGenomes	N/A	IEA
GO:0003924	GO-mf	GTPase activity	EnsemblGenomes	N/A	IEA
GO:0005525	GO-mf	GTP binding	EnsemblGenomes	N/A	IEA
GO:0005525	GO-mf	GTP binding	JGI	N/A	IEA
GO:0015093	GO-mf	ferrous iron transmembrane transporter activity	JGI	N/A	IEA
KOG1489	KOG	Predicted GTP-binding protein (ODN superfamily)	JGI	N/A	IEA
PTHR11702	Panther	DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED	JGI	N/A	IEA
PTHR11702:SF3	Panther	GTP-BINDING PROTEIN 5	JGI	N/A	IEA
PF01018	PFAM	GTP1/OBG	JGI	N/A	IEA
PF01926	PFAM	50S ribosome-binding GTPase	JGI	N/A	IEA
PF09269	PFAM	Domain of unknown function (DUF1967)	JGI	N/A	IEA

Expression Patterns of Glyma.13g216800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g216800 not represented in the dataset	Glyma.13g216800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g216800

Paralog	Evidence	Comments
Glyma.15g095700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g216800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g28800	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g216800

Limit To All Plant Sequences

>Glyma.13g216800.2 sequence-type=transcript locus=Glyma.13g216800 ID=Glyma.13g216800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCAAGGACAAAGATGGCTGCTGCTACAGCTACTGCTTCTTCAATCTCAGCGTGGTTCACTCCTCACGCTTTCGCTCGTCGCAAAACCCGGAACCCTAAAATTCAGAAACCAGTCCTCCCAGTCCCCGGCGGCGGCGAAGCCACCACCTACACTCGCCTCCCGCTCAAGCACGACTATTCCGCTCCCTCCCCTCTCTCCTCTCCCGAAATCAAGCTCTCCGAAACAGCCCCACCGATCACCCGCCTCCTCCGTAATCGTAAACCACAAAATATAAAACAAGACGACGTCGTGTTCGAATATTCCGATTCCGAACCTGAAAGCGACGGCGAGTATGAAGCCTTCGACTTTTCGGGAGACGAGAATGTGGGCGAAGGCGAGGAAGAGACTCCGAGCGTGAAGGAGAAGGGGGTGCCGGCGGTGATGCGGTGTTTCGACCGGGCGAAGATATACGTGAAGTCGGGGGACGGTGGGAACGGCGTGGTGGCGTTCCGGCGGGAGAAGTACGTGCCGATGGGAGGGCCTTCGGGGGGCGACGGAGGGAGGGGAGGCGACGTGTACGTGGAGGATCTGGTGGTGAAGGTGCCACCTGGAACGGTTGTTCGAATGAGTGGCGAGGATAACGTGCTGTTGGAGATGGTGTATCCGGGACAGAAAGGGTTGCTGTTGCCAGGTGGTAGAGGAGGCAGAGGGAATGCTTCATTCAAGTCAGGGACTAATAAGGTCCCCAAGATTGCCGAGAATGGGGAAGAGGGTCCTGAAATGTGGTTGGAGTTAGAACTCAAGCTGGTTGCGGATGTTGGTATAGTTGGTGCTCCGAATGCAGGGAAAAGTACACTTTTGAGTGTTGTTAGTGCTGCAAAGCCGGCTGTTGCTAATTATCCTTTTACAACACTGCTTCCGAATCTCGGTGTTGTTTCCTTTGACTATGATTCAACCATGGTTGTGGCAGACCTTCCGGGTCTACTTGAAGGGGCACATCGAGGTTTTGGTTTAGGCCATGAGTTTCTACGGCACACTGAAAGGTGTTCTGCTCTGGTACATGTTGTTGATGGTTCATCACAGCAGCCAGATCTCGAGTTTGACGCAGTTCGTCTAGAGCTGAAGCTATTTAATCCTGAACTTGCTGAGAAGCCTTATGTAGTTGCTTTTAACAAAATGGATCTTCCAGAAGCATATGAAAACTGGGAATCCTTCAAAGAAAAGTTGCAATCTCGTGGGATCACACCATTTTGTATGAGTGCTGTCAAAAGGGAAGGTACTCATGAAGTTATCTGTGCTGCTTATGAGCTTTTGCGTAAAAGTAAAGAAGACAAGGAGGAATATGAAGATGGAAGAGATATGGTAAACTTGAACCATGTCGCTGCTGCAGTAAAGAAGCAGCGGAGTGCATCCATTAGTGATTTTGAGATTTTTCATGACAGCGATTCAAATATTTGGCATGTAGTTGGATCTGGATTGCAACGATTTATACAGATGACGAATTGGCGGTACATTGATTCGGAGAGAAGATTCCAACATGTTCTTGAGGCTTGTGGTGTGTACAAGTCTCTCATGAAACTTGGTGTAAAGGAAGGGGACACGGTAATTGTTGGAGAGATGAAGATGATATGGCATGACTCCTCTGACAATCCTGGTGCATCTAGGATGAAGAAAATATCCACAGATTCATTTAAATGGGCTGAATGGAAGTAATGCCACTCATTTTTGGTGTTTCTAGATTCATGTGTACTGCAATTATGCCATAGGAAGCAAATTCAATCATAATGAGGTGATACTACTATAGAAGAGAAAGTCATGGAAAGCTGCATCAAAAAGCATAAGGTAATGCAAACCATTACATGGTTGTCCTGTGATGGGATGATGCTCATATTCGACTTGAAGCCGAGGTCTTCATCTGCTCATAAGTCAGGTACAAGCAGTCGTTGCGGTGCACATATAACATTGTTTGCTAAAATTGGTTTAAATCAGATAACAAACAAACAGAAGAACGTGGTTACTCATGTAATTGTATAATGATGTACTATATATTATTTTGTATAGGATGTAAAATGCTTAATATGATTACATCCTTATTCTTGACAGACTGCTCTCATGTGGGTTGGATATTTCGATGAAATTAAAGTGAACAGTCAAATTTCAAGTTGTCTTAAGTCATCAATAAAAACGATCGATACTTTCAAGTTTATGTTC

Coding sequences of Glyma.13g216800

Limit To All Plant Sequences

>Glyma.13g216800.1 sequence-type=CDS polypeptide=Glyma.13g216800.1.p locus=Glyma.13g216800 ID=Glyma.13g216800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCTACAGCTACTGCTTCTTCAATCTCAGCGTGGTTCACTCCTCACGCTTTCGCTCGTCGCAAAACCCGGAACCCTAAAATTCAGAAACCAGTCCTCCCAGTCCCCGGCGGCGGCGAAGCCACCACCTACACTCGCCTCCCGCTCAAGCACGACTATTCCGCTCCCTCCCCTCTCTCCTCTCCCGAAATCAAGCTCTCCGAAACAGCCCCACCGATCACCCGCCTCCTCCGTAATCGTAAACCACAAAATATAAAACAAGACGACGTCGTGTTCGAATATTCCGATTCCGAACCTGAAAGCGACGGCGAGTATGAAGCCTTCGACTTTTCGGGAGACGAGAATGTGGGCGAAGGCGAGGAAGAGACTCCGAGCGTGAAGGAGAAGGGGGTGCCGGCGGTGATGCGGTGTTTCGACCGGGCGAAGATATACGTGAAGTCGGGGGACGGTGGGAACGGCGTGGTGGCGTTCCGGCGGGAGAAGTACGTGCCGATGGGAGGGCCTTCGGGGGGCGACGGAGGGAGGGGAGGCGACGTGTACGTGGAGGTCGACGGGGCGATGAATTCGCTGCTGCCGTTTCGGAACAGCGTGCATTTCCGGGCAGGGAGGGGAGGCCACGGGCAGGGGAGCATGCAGAGTGGGGCAAAGGGGGAGGATCTGGTGGTGAAGGTGCCACCTGGAACGGTTGTTCGAATGAGTGGCGAGGATAACGTGCTGTTGGAGATGGTGTATCCGGGACAGAAAGGGTTGCTGTTGCCAGGTGGTAGAGGAGGCAGAGGGAATGCTTCATTCAAGTCAGGGACTAATAAGGTCCCCAAGATTGCCGAGAATGGGGAAGAGGGTCCTGAAATGTGGTTGGAGTTAGAACTCAAGCTGGTTGCGGATGTTGGTATAGTTGGTGCTCCGAATGCAGGGAAAAGTACACTTTTGAGTGTTGTTAGTGCTGCAAAGCCGGCTGTTGCTAATTATCCTTTTACAACACTGCTTCCGAATCTCGGTGTTGTTTCCTTTGACTATGATTCAACCATGGTTGTGGCAGACCTTCCGGGTCTACTTGAAGGGGCACATCGAGGTTTTGGTTTAGGCCATGAGTTTCTACGGCACACTGAAAGGTGTTCTGCTCTGGTACATGTTGTTGATGGTTCATCACAGCAGCCAGATCTCGAGTTTGACGCAGTTCGTCTAGAGCTGAAGCTATTTAATCCTGAACTTGCTGAGAAGCCTTATGTAGTTGCTTTTAACAAAATGGATCTTCCAGAAGCATATGAAAACTGGGAATCCTTCAAAGAAAAGTTGCAATCTCGTGGGATCACACCATTTTGTATGAGTGCTGTCAAAAGGGAAGGTACTCATGAAGTTATCTGTGCTGCTTATGAGCTTTTGCGTAAAAGTAAAGAAGACAAGGAGGAATATGAAGATGGAAGAGATATGGTAAACTTGAACCATGTCGCTGCTGCAGTAAAGAAGCAGCGGAGTGCATCCATTAGTGATTTTGAGATTTTTCATGACAGCGATTCAAATATTTGGCATGTAGTTGGATCTGGATTGCAACGATTTATACAGATGACGAATTGGCGGTACATTGATTCGGAGAGAAGATTCCAACATGTTCTTGAGGCTTGTGGTGTGTACAAGTCTCTCATGAAACTTGGTGTAAAGGAAGGGGACACGGTAATTGTTGGAGAGATGAAGATGATATGGCATGACTCCTCTGACAATCCTGGTGCATCTAGGATGAAGAAAATATCCACAGATTCATTTAAATGGGCTGAATGGAAGTAA

>Glyma.13g216800.2 sequence-type=CDS polypeptide=Glyma.13g216800.2.p locus=Glyma.13g216800 ID=Glyma.13g216800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCTACAGCTACTGCTTCTTCAATCTCAGCGTGGTTCACTCCTCACGCTTTCGCTCGTCGCAAAACCCGGAACCCTAAAATTCAGAAACCAGTCCTCCCAGTCCCCGGCGGCGGCGAAGCCACCACCTACACTCGCCTCCCGCTCAAGCACGACTATTCCGCTCCCTCCCCTCTCTCCTCTCCCGAAATCAAGCTCTCCGAAACAGCCCCACCGATCACCCGCCTCCTCCGTAATCGTAAACCACAAAATATAAAACAAGACGACGTCGTGTTCGAATATTCCGATTCCGAACCTGAAAGCGACGGCGAGTATGAAGCCTTCGACTTTTCGGGAGACGAGAATGTGGGCGAAGGCGAGGAAGAGACTCCGAGCGTGAAGGAGAAGGGGGTGCCGGCGGTGATGCGGTGTTTCGACCGGGCGAAGATATACGTGAAGTCGGGGGACGGTGGGAACGGCGTGGTGGCGTTCCGGCGGGAGAAGTACGTGCCGATGGGAGGGCCTTCGGGGGGCGACGGAGGGAGGGGAGGCGACGTGTACGTGGAGGATCTGGTGGTGAAGGTGCCACCTGGAACGGTTGTTCGAATGAGTGGCGAGGATAACGTGCTGTTGGAGATGGTGTATCCGGGACAGAAAGGGTTGCTGTTGCCAGGTGGTAGAGGAGGCAGAGGGAATGCTTCATTCAAGTCAGGGACTAATAAGGTCCCCAAGATTGCCGAGAATGGGGAAGAGGGTCCTGAAATGTGGTTGGAGTTAGAACTCAAGCTGGTTGCGGATGTTGGTATAGTTGGTGCTCCGAATGCAGGGAAAAGTACACTTTTGAGTGTTGTTAGTGCTGCAAAGCCGGCTGTTGCTAATTATCCTTTTACAACACTGCTTCCGAATCTCGGTGTTGTTTCCTTTGACTATGATTCAACCATGGTTGTGGCAGACCTTCCGGGTCTACTTGAAGGGGCACATCGAGGTTTTGGTTTAGGCCATGAGTTTCTACGGCACACTGAAAGGTGTTCTGCTCTGGTACATGTTGTTGATGGTTCATCACAGCAGCCAGATCTCGAGTTTGACGCAGTTCGTCTAGAGCTGAAGCTATTTAATCCTGAACTTGCTGAGAAGCCTTATGTAGTTGCTTTTAACAAAATGGATCTTCCAGAAGCATATGAAAACTGGGAATCCTTCAAAGAAAAGTTGCAATCTCGTGGGATCACACCATTTTGTATGAGTGCTGTCAAAAGGGAAGGTACTCATGAAGTTATCTGTGCTGCTTATGAGCTTTTGCGTAAAAGTAAAGAAGACAAGGAGGAATATGAAGATGGAAGAGATATGGTAAACTTGAACCATGTCGCTGCTGCAGTAAAGAAGCAGCGGAGTGCATCCATTAGTGATTTTGAGATTTTTCATGACAGCGATTCAAATATTTGGCATGTAGTTGGATCTGGATTGCAACGATTTATACAGATGACGAATTGGCGGTACATTGATTCGGAGAGAAGATTCCAACATGTTCTTGAGGCTTGTGGTGTGTACAAGTCTCTCATGAAACTTGGTGTAAAGGAAGGGGACACGGTAATTGTTGGAGAGATGAAGATGATATGGCATGACTCCTCTGACAATCCTGGTGCATCTAGGATGAAGAAAATATCCACAGATTCATTTAAATGGGCTGAATGGAAGTAA

Predicted protein sequences of Glyma.13g216800

Limit To All Plant Sequences

>Glyma.13g216800.1.p sequence-type=predicted peptide transcript=Glyma.13g216800.1 locus=Glyma.13g216800 ID=Glyma.13g216800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAATATASSISAWFTPHAFARRKTRNPKIQKPVLPVPGGGEATTYTRLPLKHDYSAPSPLSSPEIKLSETAPPITRLLRNRKPQNIKQDDVVFEYSDSEPESDGEYEAFDFSGDENVGEGEEETPSVKEKGVPAVMRCFDRAKIYVKSGDGGNGVVAFRREKYVPMGGPSGGDGGRGGDVYVEVDGAMNSLLPFRNSVHFRAGRGGHGQGSMQSGAKGEDLVVKVPPGTVVRMSGEDNVLLEMVYPGQKGLLLPGGRGGRGNASFKSGTNKVPKIAENGEEGPEMWLELELKLVADVGIVGAPNAGKSTLLSVVSAAKPAVANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALVHVVDGSSQQPDLEFDAVRLELKLFNPELAEKPYVVAFNKMDLPEAYENWESFKEKLQSRGITPFCMSAVKREGTHEVICAAYELLRKSKEDKEEYEDGRDMVNLNHVAAAVKKQRSASISDFEIFHDSDSNIWHVVGSGLQRFIQMTNWRYIDSERRFQHVLEACGVYKSLMKLGVKEGDTVIVGEMKMIWHDSSDNPGASRMKKISTDSFKWAEWK*

>Glyma.13g216800.2.p sequence-type=predicted peptide transcript=Glyma.13g216800.2 locus=Glyma.13g216800 ID=Glyma.13g216800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAATATASSISAWFTPHAFARRKTRNPKIQKPVLPVPGGGEATTYTRLPLKHDYSAPSPLSSPEIKLSETAPPITRLLRNRKPQNIKQDDVVFEYSDSEPESDGEYEAFDFSGDENVGEGEEETPSVKEKGVPAVMRCFDRAKIYVKSGDGGNGVVAFRREKYVPMGGPSGGDGGRGGDVYVEDLVVKVPPGTVVRMSGEDNVLLEMVYPGQKGLLLPGGRGGRGNASFKSGTNKVPKIAENGEEGPEMWLELELKLVADVGIVGAPNAGKSTLLSVVSAAKPAVANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALVHVVDGSSQQPDLEFDAVRLELKLFNPELAEKPYVVAFNKMDLPEAYENWESFKEKLQSRGITPFCMSAVKREGTHEVICAAYELLRKSKEDKEEYEDGRDMVNLNHVAAAVKKQRSASISDFEIFHDSDSNIWHVVGSGLQRFIQMTNWRYIDSERRFQHVLEACGVYKSLMKLGVKEGDTVIVGEMKMIWHDSSDNPGASRMKKISTDSFKWAEWK*

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