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Report for Sequence Feature Glyma.13g215600

Feature Type:gene_model
Chromosome:Gm13
Start:32896705
stop:32900912
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g215600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18650.1AT CHY-type/CTCHY-type/RING-type Zinc finger protein JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG1940 KOG Zn-finger protein JGI N/AIEA
KOG4172 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR21319Panther RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA
PF05495PFAM CHY zinc finger JGI N/AIEA

Expression Patterns of Glyma.13g215600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g215600 not represented in the dataset
Glyma.13g215600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g215600
ParalogEvidenceComments
Glyma.15g097300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g215600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g28700 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g215600
>Glyma.13g215600.2 sequence-type=transcript locus=Glyma.13g215600 ID=Glyma.13g215600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACACCACCTTATCCCTTTTCTTTCTCTCTCTTCCCAAGTGGATACATTCTATTCCTTATCAACTTTCGTAGCCAAAGATTTTTGCTACTATTAtacattacattgcattaaaatactactacataataacaacaacaacaataagaatGGCTTGCTCCTCCTTCATCTTTCTTTGTCAATATCAACACCATCATCTCCAACACCAACAAAATCTTTCCAATTTAGGAAACTCTTCTCTCAGCCTTCCTTCCCCTTCTCTCTTTTCCAAAACTAATGGAAGGTTCTGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCGTCCGCCAGGACGTTCAACATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAATTGTGGTGTCAGAATGGGAGAATATTTCTGCAATATCTGCAAATTCTTCGATGATGATACTTGGTGGTCGTGAGAATTATTCCCACTGCAGTAAGTGTGGGTGTTGCTACTCAAATACTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAAGACATTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGCTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTATGTAATGACTGTAATGACACAACTGAAGTTTACTTCCACATTCTTGGACAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCTATAGCTCCTCCAGTTCTTTCTCAATGACTAGATTCTTGCGGTTTTGGAGACAGATTTTTTAGGGCAGAAAATTAAAATTATGACTCAATTATGCAGAGCCTTATTTGATTCATCATCAAGATTAATGATGTACTGTGCCCTGAAACTTTTCTAGGGTTACTCTTCCTCCACCATTTGGAGTAGGACTAGTGGTGTTGTTATGAGCCACTAATTGAGTTGATATAAACATGTGTATATTGTAATATAGGGTAATGTGGTTTAGCCATCATGAGCTGCTAGTAATCATGTTTGCTAGTGACGTGTTGATGTTGGAGGTTGCATGGATTGGCTTGTCTTTGCCATTATTGAATTTAATCAACACAACAGACTCAATGATTTCTTCCCTGCATAAATCAATCATATGCTATTACCTTT

>Glyma.13g215600.3 sequence-type=transcript locus=Glyma.13g215600 ID=Glyma.13g215600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACACCACCTTATCCCTTTTCTTTCTCTCTCTTCCCAAGTGGATACATTCTATTCCTTATCAACTTTCGTAGCCAAAGATTTTTGCTACTATTAtacattacattgcattaaaatactactacataataacaacaacaacaataagaatGGCTTGCTCCTCCTTCATCTTTCTTTGTCAATATCAACACCATCATCTCCAACACCAACAAAATCTTTCCAATTTAGGAAACTCTTCTCTCAGCCTTCCTTCCCCTTCTCTCTTTTCCAAAACTAATGGAAGGTTCTGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCGTCCGCCAGGACGTTCAACATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAATTGTGGTGTCAGAATGGGAGAATATTTCTGCAATATCTGCAAATTCTTCGATGATGATACCGGGAAAAAACAGTTTCATTGTGATGATTGTGGGATTTGTAGACTTGGTGGTCGTGAGAATTATTCCCACTGCAGTAAGTGTGGGTGTTGCTACTCAAATACTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAAGACATTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGCTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTATGTAATGACTGTAATGACACAACTGAAGTTTACTTCCACATTCTTGGACAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCTATAGCTCCTCCAGTTCTTTCTCAATGACTAGATTCTTGCGGTTTTGGAGACAGATTTTTTAGGGCAGAAAATTAAAATTATGACTCAATTATGCAGAGCCTTATTTGATTCATCATCAAGATTAATGATGTACTGTGCCCTGAAACTTTTCTAGGGTTACTCTTCCTCCACCATTTGGAGTAGGACTAGTGGTGTTGTTATGAGCCACTAATTGAGTTGATATAAACATGTGTATATTGTAATATAGGGTAATGTGGTTTAGCCATCATGAGCTGCTAGTAATCATGTTTGCTAGTGACGTGTTGATGTTGGAGGTTGCATGGATTGGCTTGTCTTTGCCATTATTGAATTTAATCAACACAACAGACTCAATGATTTCTTCCCTGCATAAATCAATCATATGCTATTACCTTT
Coding sequences of Glyma.13g215600
>Glyma.13g215600.1 sequence-type=CDS polypeptide=Glyma.13g215600.1.p locus=Glyma.13g215600 ID=Glyma.13g215600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTTCTGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCGTCCGCCAGGACGTTCAACATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAATTGTGGTGTCAGAATGGGAGAATATTTCTGCAATATCTGCAAATTCTTCGATGATGATCATTGGTTACACATTAAGCAGACCGGGAAAAAACAGTTTCATTGTGATGATTGTGGGATTTGTAGACTTGGTGGTCGTGAGAATTATTCCCACTGCAGTAAGTGTGGGTGTTGCTACTCAAATACTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAAGACATTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGCTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTATGTAATGACTGTAATGACACAACTGAAGTTTACTTCCACATTCTTGGACAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCTATAGCTCCTCCAGTTCTTTCTCAATGA

>Glyma.13g215600.2 sequence-type=CDS polypeptide=Glyma.13g215600.2.p locus=Glyma.13g215600 ID=Glyma.13g215600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAATTGTGGTGTCAGAATGGGAGAATATTTCTGCAATATCTGCAAATTCTTCGATGATGATACTTGGTGGTCGTGAGAATTATTCCCACTGCAGTAAGTGTGGGTGTTGCTACTCAAATACTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAAGACATTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGCTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTATGTAATGACTGTAATGACACAACTGAAGTTTACTTCCACATTCTTGGACAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCTATAGCTCCTCCAGTTCTTTCTCAATGA

>Glyma.13g215600.3 sequence-type=CDS polypeptide=Glyma.13g215600.3.p locus=Glyma.13g215600 ID=Glyma.13g215600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTTCTGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCGTCCGCCAGGACGTTCAACATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAATTGTGGTGTCAGAATGGGAGAATATTTCTGCAATATCTGCAAATTCTTCGATGATGATACCGGGAAAAAACAGTTTCATTGTGATGATTGTGGGATTTGTAGACTTGGTGGTCGTGAGAATTATTCCCACTGCAGTAAGTGTGGGTGTTGCTACTCAAATACTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAAGACATTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGCTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTATGTAATGACTGTAATGACACAACTGAAGTTTACTTCCACATTCTTGGACAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCTATAGCTCCTCCAGTTCTTTCTCAATGA
Predicted protein sequences of Glyma.13g215600
>Glyma.13g215600.1.p sequence-type=predicted peptide transcript=Glyma.13g215600.1 locus=Glyma.13g215600 ID=Glyma.13g215600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGSVLERLDFGKMGYGCKHYRRRCRIRAPCCNELYFCRHCHNEATSMLSNPFDRHELVRQDVQHVVCSVCDTEQPVAQVCTNCGVRMGEYFCNICKFFDDDHWLHIKQTGKKQFHCDDCGICRLGGRENYSHCSKCGCCYSNTLRDNHLCVENSMRHHCPICYEYLFDSLKDIAVMKCGHTMHSECYLEMLKRDKYCCPICSKSVMDMSRAWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHILGQKCGHCSSYNTRAIAPPVLSQ*

>Glyma.13g215600.2.p sequence-type=predicted peptide transcript=Glyma.13g215600.2 locus=Glyma.13g215600 ID=Glyma.13g215600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLFVQFVTQSSQLLKFAQIVVSEWENISAISANSSMMILGGRENYSHCSKCGCCYSNTLRDNHLCVENSMRHHCPICYEYLFDSLKDIAVMKCGHTMHSECYLEMLKRDKYCCPICSKSVMDMSRAWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHILGQKCGHCSSYNTRAIAPPVLSQ*

>Glyma.13g215600.3.p sequence-type=predicted peptide transcript=Glyma.13g215600.3 locus=Glyma.13g215600 ID=Glyma.13g215600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGSVLERLDFGKMGYGCKHYRRRCRIRAPCCNELYFCRHCHNEATSMLSNPFDRHELVRQDVQHVVCSVCDTEQPVAQVCTNCGVRMGEYFCNICKFFDDDTGKKQFHCDDCGICRLGGRENYSHCSKCGCCYSNTLRDNHLCVENSMRHHCPICYEYLFDSLKDIAVMKCGHTMHSECYLEMLKRDKYCCPICSKSVMDMSRAWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHILGQKCGHCSSYNTRAIAPPVLSQ*






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