Report for Sequence Feature Glyma.13g212800
Feature Type: gene_model
Chromosome: Gm13
Start: 32634204
stop: 32636454
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.13g212800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G21510.1 AT
histidine-containing phosphotransmitter 1
JGI N/A IEA
GO:0000160 GO-bp
phosphorelay signal transduction system
EnsemblGenomes N/A IEA
GO:0000160 GO-bp
phosphorelay signal transduction system
JGI N/A IEA
GO:0006468 GO-bp
protein phosphorylation
EnsemblGenomes N/A IEA
GO:0009736 GO-bp
cytokinin-activated signaling pathway
EnsemblGenomes N/A IEA
GO:0016310 GO-bp
phosphorylation
EnsemblGenomes N/A IEA
GO:0005634 GO-cc
nucleus
EnsemblGenomes N/A IEA
GO:0005737 GO-cc
cytoplasm
EnsemblGenomes N/A IEA
GO:0004871 GO-mf
signal transducer activity
EnsemblGenomes N/A IEA
GO:0004871 GO-mf
signal transducer activity
JGI N/A IEA
GO:0009927 GO-mf
histidine phosphotransfer kinase activity
EnsemblGenomes N/A IEA
GO:0043424 GO-mf
protein histidine kinase binding
EnsemblGenomes N/A IEA
KOG4747
KOG
Two-component phosphorelay intermediate involved in MAP kinase cascade regulation
JGI N/A IEA
PF01627 PFAM
Hpt domain
JGI N/A IEA
Expression Patterns of Glyma.13g212800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.13g212800
Paralog Evidence Comments
Glyma.15g099800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.13g212800 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma13g28390 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.13g212800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.13g212800.2 sequence-type=transcript locus=Glyma.13g212800 ID=Glyma.13g212800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACCACTATCTTCTTATGTTGTTTTGTATTGTGTGACAGACAACTCAAAAAAACCATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTTGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAAGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGTGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGCGCGCAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCCTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCATAGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGATCAATCCCTACGGAACTGAGTTTCATTGGGTGACTGAGAGGGTTTGTAGAGATGCTTGTATTATGATCCTCTTTGTTAAAGATTATCCTTTATCTTATTAAGTCCATGGTGAATGTATGGGTTTTTATAAAATAGAAGTTTTCCATCCAATGTACCTTTTTCTTCACCAAAAAGCTCTTCATAATTTGTAATCTCTTGCATGCTTTAATGAAGGATGATAGCACCATTAATTGAACTTTCCTCTTTTATCTCTCTTCCAAACAAGGAAGAAAATTAGTGGTGACAACACAATACAATCCTTTCAACACCAAATAGTCTAAATGAACATCTGAATTATGAATACCTTAGTTGGATAAACACTTATT
Coding sequences of Glyma.13g212800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.13g212800.1 sequence-type=CDS polypeptide=Glyma.13g212800.1.p locus=Glyma.13g212800 ID=Glyma.13g212800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTTGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAAGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGTGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGCGCGCAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCCTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCATAGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGATCAATCCCTACGGAACTGAGTTTCATTGGGTGA
>Glyma.13g212800.2 sequence-type=CDS polypeptide=Glyma.13g212800.2.p locus=Glyma.13g212800 ID=Glyma.13g212800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTTGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAAGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGTGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGCGCGCAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCCTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCATAGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGATCAATCCCTACGGAACTGAGTTTCATTGGGTGA
Predicted protein sequences of Glyma.13g212800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.13g212800.1.p sequence-type=predicted peptide transcript=Glyma.13g212800.1 locus=Glyma.13g212800 ID=Glyma.13g212800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACLRCLQQVKQEYCIVKNKLETMFRLEQQIVAAGGSIPTELSFIG*
>Glyma.13g212800.2.p sequence-type=predicted peptide transcript=Glyma.13g212800.2 locus=Glyma.13g212800 ID=Glyma.13g212800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACLRCLQQVKQEYCIVKNKLETMFRLEQQIVAAGGSIPTELSFIG*