SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g211700

Feature Type:gene_model
Chromosome:Gm13
Start:32541959
stop:32543724
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g211700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18930.1AT Adenosylmethionine decarboxylase family protein JGI N/AIEA
GO:0006557GO-bp S-adenosylmethioninamine biosynthetic process EnsemblGenomesN/AIEA
GO:0006596GO-bp polyamine biosynthetic process EnsemblGenomesN/AIEA
GO:0006597GO-bp spermine biosynthetic process EnsemblGenomesN/AIEA
GO:0006597GO-bp spermine biosynthetic process JGI N/AIEA
GO:0008295GO-bp spermidine biosynthetic process EnsemblGenomesN/AIEA
GO:0008295GO-bp spermidine biosynthetic process JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0004014GO-mf adenosylmethionine decarboxylase activity EnsemblGenomesN/AIEA
GO:0004014GO-mf adenosylmethionine decarboxylase activity JGI N/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016831GO-mf carboxy-lyase activity EnsemblGenomesN/AIEA
KOG0788 KOG S-adenosylmethionine decarboxylase JGI N/AIEA
PTHR11570Panther S-ADENOSYLMETHIONINE DECARBOXYLASE JGI N/AIEA
PF01536PFAM Adenosylmethionine decarboxylase JGI N/AIEA
ARGSPECAT-PWYSoyCyc9 spermine biosynthesis Plant Metabolic Network ISS
BSUBPOLYAMSYN-PWYSoyCyc9 spermidine biosynthesis I Plant Metabolic Network ISS
POLYAMINSYN3-PWYSoyCyc9 superpathway of polyamine biosynthesis II Plant Metabolic Network ISS
PWY-7528SoyCyc9 L-methionine salvage cycle I (bacteria and plants) Plant Metabolic Network ISS
GN7V-40680SoyCyc9-rxn adenosylmethionine decarboxylase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g211700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g211700
ParalogEvidenceComments
Glyma.15g101000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g211700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g28280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g211700
>Glyma.13g211700.1 sequence-type=CDS polypeptide=Glyma.13g211700.1.p locus=Glyma.13g211700 ID=Glyma.13g211700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATTCGCATTCTCAGGTTTCGAAGGCTTCGAGAAGAGGCTGGAGCTCCATTTCTTTGGCGACGACCCAACTATCCTCCAACTAGGCCTCAGAAAACTCTCCTTCGAGTGCATACAACAAACCCTAGAAGCAGTCCAATGCACTGTCGTTTCAGCCGTTGGAAACTCCTACTTTGACGCTTATGTGTTATCAGAATCAAGCCTCTTTGTGTACCCAACAAAGATCATCATCAAAACGTGTGGAACCACGCAGCTTCTCAAATCCATAACTCCCTTAATCTTCTACGCACAGACCCATCTCGGTCTCACTCTCTCTTTATGTCGCTACACCCGCGGAAGCTTCATCTTTCCTCTGTCACAACCCTTCCCTCACACGAGCTTCGAACACGAAGTTACTTACTTGGAAACAACCCTTCCTTCGGACCTGTGTTTCAGAAAAGCCTCCATCATGCCCTCGAAATCCTCCTCACACGCGTGGCACGTGTTCACCGCCACGAATATTCCTCATCATCACTCTCGCGCTCTTTACAGCGAAAGGCACGCTTACACCATGGAAATCTGCATGACCGACCTAGACCCCGTCCTCGCAAGAAAGTTTTTCCGCCGCGCCGGCGACGGAAAAACCGGCGACTCCGCCGGGAAGGAGATGACGGAGATCACCGGAGTTGACGAGATTAACCCGCAGGCGCTTGTGTGCGATTTCGCGTTCGACCCGTGCGGGTACTCCATGAATGGCATAGATGGGGAGTGGTACTCCACGATTCACGTGACGCCGGAAGACGGTTACAGCTACGCGAGTTTCGAATGTGTGGGGTCCGTGAATGATGACGTGGACATACTCCACGTGTTGAGGAAGGTGGTGCAGATATTCCGACCGGGGACGATGTCGGTCTCTACGACGTCGTTGGGGAGCGAGATGTGGAGAGAGGTATCGGGTGCGGTGGAGCCCATGGGAATGAAGTTGAGGAGCTGCGCGATGGACCAGTTCCCGGATTCTGGGAGCGTTGTCTTTCAAACGTTTACGCCGCTTCGCCGGAAAAGTGCACACTAG
Predicted protein sequences of Glyma.13g211700
>Glyma.13g211700.1.p sequence-type=predicted peptide transcript=Glyma.13g211700.1 locus=Glyma.13g211700 ID=Glyma.13g211700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFAFSGFEGFEKRLELHFFGDDPTILQLGLRKLSFECIQQTLEAVQCTVVSAVGNSYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSITPLIFYAQTHLGLTLSLCRYTRGSFIFPLSQPFPHTSFEHEVTYLETTLPSDLCFRKASIMPSKSSSHAWHVFTATNIPHHHSRALYSERHAYTMEICMTDLDPVLARKFFRRAGDGKTGDSAGKEMTEITGVDEINPQALVCDFAFDPCGYSMNGIDGEWYSTIHVTPEDGYSYASFECVGSVNDDVDILHVLRKVVQIFRPGTMSVSTTSLGSEMWREVSGAVEPMGMKLRSCAMDQFPDSGSVVFQTFTPLRRKSAH*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo