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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G06250.1 | AT | FAR1-related sequence 7 | JGI | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0009585 | GO-bp | red, far-red light phototransduction | EnsemblGenomes | N/A | IEA |
| GO:0010018 | GO-bp | far-red light signaling pathway | EnsemblGenomes | N/A | IEA |
| GO:0042753 | GO-bp | positive regulation of circadian rhythm | EnsemblGenomes | N/A | IEA |
| GO:0045893 | GO-bp | positive regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0003700 | GO-mf | DNA binding transcription factor activity | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| PF03101 | PFAM | FAR1 DNA-binding domain | JGI | N/A | IEA |
| PF04434 | PFAM | SWIM zinc finger | JGI | N/A | IEA |
| PF10551 | PFAM | MULE transposase domain | JGI | N/A | IEA |
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| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g101500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g28230 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g211200.1 sequence-type=CDS polypeptide=Glyma.13g211200.1.p locus=Glyma.13g211200 ID=Glyma.13g211200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATTGTGAAGGATCATTTTGTTGGTACTGAACTGGCAATGAGTAATACTTGTGTGGAGGAGGGAATAGATTTCTCTTGTGACCCATACATAGGGTTAGAATTTGATACAGCTGATGAAGCACTTAAGTATTACACTTCATATGCCAATCGAACAGGGTTTAAAGTTCGGATTGGTCAGCTTTATCGATCAAGAACTGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCGAAGGAGGGACATCAACTTAGTTCAAGAACTGACTGTCCAGCATTCATAAGGGTACAACTAAATGGTTCTGGAAAGTGGGTGGTTGATCATTTTCATAAGGACCATAATCACCATCTTGAAATCAGTGGTGAAAATTGCACTCCAACATTGCAACCGAAGGGTGCTGGTGCTACAGTTATCAACTCTCTTACTGAGTTTCCTCGCAGGACGAGGAAGAAATTGCTTGAAGAAGCCAATGATGAGTCCTCTTGTCCCTTTGGCATTATTGATTTCAAGCGTCTGAGAAAGGAAGAACTTGAAGGACAGTCCAGGACTGAACCATATGTGGGTCAAGAGTTCAGTTCACCTAACGAAGCCTACCAATTTTATCATGCATATGCAGCGCATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCTAAGAATGATGGGTCGATCACATCCCGCAGATTTGTTTGCTCTAAAGAGGGGTTCCAGCACCCTTCAAGAGTTGGTTGTGGGGCTTATTTAAGGATTAAGAGACAGCCATCGGGAAAGTGGATAGTGGACCGCCTCCGAAAAGATCATAACCATGATCTGGACTCTGAAAAGGTGGGCAGGGCAAAAAGTCTTCCTGCTTCTAATATTTTGGCTGAAGAGGTAGATACTGGATTGTTAAATGGTGACTTATTTAGAATAGATAACTACCCTGTCCCTAGAGGAGGTAGGCAAAATCACATTAGAAGTGAGTGGTATGGCATTCTTTTAGAGTATTTTCAATCAAGACAAGCAGAAGATACTGGATTCTTTTATGCCATGGAAGTTGACAATGGAAATTGCATGAACATATTTTGGGCAGATGGAAGATCTAGATATTCATGTAGTCACTTTGGTGATGTCCTTGTCTTAGACACATCATACCGAAAAACTGTCTATTTGGTACCATTTGCTACTTTTGTTGGAGTCAACCATCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCTGCCTCTGACAGTTATCGCAGATCAAGACATTGCAATCCAGAGGGCAATAGCAAAAGTCTTTCCTGTAACCCATCATCGCTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTAATGGCTTTACAAAAGATTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAATGTCCTACTCAACAAATATGGATTGAAGGACGATGCTTGGCTAAAAGAAATGTATCAGAAGCGTGCATCTTGGGTTCCATTATATTTAAAGGGCACATTTTTTGCTGGCATTCCCATGAATGAGAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCATGGAGTTCATTCCTCGGTATGAAAGGGGTCTCGAGCGACGCCGTGAAGAAGAAAGAAAAGAGGATTTTAACACTTCTAATTTTCAACCCATTTTGCAAACTAAAGAACCAGTAGAAGAACAATGTAGAAGGCTTTACACTCTTACTGTTTTCAAAATATTTCAGAAAGAGCTTTTGCAGTGCTTTAGCTATCTTGGGTTTAAAATATTTGAGGAAGGGGGTCTGAGCAGATATATGGTGCGTAGATGTGGAAATGATATGGAGAAGCATGTAGTTACATTTAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAATATGAAGGTGTTCTTTGTAGACACGTGTTGAGGGTTTTCCAGATATTGCAATTAAGAGAAGTCCCTTCTCGCTACATCTTACACCGATGGACAAGAAATGCCGAGGATGGTGTTTTTCCTGACATGGAATCATGGAGTAGCTCTCAGGAACTAAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGATGCTGGTGCAACATCCTTTGAAAAGTATAAACTTGCCTTTGAAATTTTGCGCGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA
>Glyma.13g211200.1.p sequence-type=predicted peptide transcript=Glyma.13g211200.1 locus=Glyma.13g211200 ID=Glyma.13g211200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MIVKDHFVGTELAMSNTCVEEGIDFSCDPYIGLEFDTADEALKYYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLSSRTDCPAFIRVQLNGSGKWVVDHFHKDHNHHLEISGENCTPTLQPKGAGATVINSLTEFPRRTRKKLLEEANDESSCPFGIIDFKRLRKEELEGQSRTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGSITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWIVDRLRKDHNHDLDSEKVGRAKSLPASNILAEEVDTGLLNGDLFRIDNYPVPRGGRQNHIRSEWYGILLEYFQSRQAEDTGFFYAMEVDNGNCMNIFWADGRSRYSCSHFGDVLVLDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRLPLTVIADQDIAIQRAIAKVFPVTHHRFSLWQIKAKEQENMGLMGNGFTKDYEKCVYQSQTVDEFDATWNVLLNKYGLKDDAWLKEMYQKRASWVPLYLKGTFFAGIPMNESLDSFFGALLNAQTPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLTVFKIFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNLSISCSCQMFEYEGVLCRHVLRVFQILQLREVPSRYILHRWTRNAEDGVFPDMESWSSSQELKNLMLWSLRETASKYIDAGATSFEKYKLAFEILREGGRKLCWHR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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