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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G23940.1 | AT | dehydratase family | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0009082 | GO-bp | branched-chain amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009553 | GO-bp | embryo sac development | EnsemblGenomes | N/A | IEA |
| GO:0009555 | GO-bp | pollen development | EnsemblGenomes | N/A | IEA |
| GO:0009651 | GO-bp | response to salt stress | EnsemblGenomes | N/A | IEA |
| GO:0048364 | GO-bp | root development | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0009570 | GO-cc | chloroplast stroma | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004160 | GO-mf | dihydroxy-acid dehydratase activity | EnsemblGenomes | N/A | IEA |
| GO:0005507 | GO-mf | copper ion binding | EnsemblGenomes | N/A | IEA |
| KOG2448 | KOG | Dihydroxy-acid dehydratase | JGI | N/A | IEA |
| PTHR21000 | Panther | DIHYDROXY-ACID DEHYDRATASE (DAD) | JGI | N/A | IEA |
| PF00920 | PFAM | Dehydratase family | JGI | N/A | IEA |
| BRANCHED-CHAIN-AA-SYN-PWY | SoyCyc9 | superpathway of branched chain amino acid biosynthesis | Plant Metabolic Network | ISS | |
| VALSYN-PWY | SoyCyc9 | L-valine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-56374 | SoyCyc9-rxn | dihydroxy-acid dehydratase | Plant Metabolic Network | ISS |
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Glyma.13g207900 not represented in the dataset |
Glyma.13g207900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g27810 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g207900.1 sequence-type=CDS polypeptide=Glyma.13g207900.1.p locus=Glyma.13g207900 ID=Glyma.13g207900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAGTCCACACTCTTCAACCCCACCCATTCCCTTATCCCCACTTCACCACACTCTATCAGATCCAATTCTGGTCATGCTTCTCTCTCCGTTCGCGCCTCCATCGCCGTGGAAACCCCCACGGAGACGGTGAAGCTGAACAAGTACAGCTCCCGCATCACCGAGCCCAAATCGCAGGGCGCCTCCCAGGCCGTGCTCTACGGCGTCGGTCTCTCCGAGGACGACATGGCCAAGCCCCAGGTCGGCGTCTCCTCGGTCTGGTACGAGGGCAACACCTGCAACATGCACCTCCTCCACCTCTCCGAGGCCGTGCGTGACGGCGTTGCTGCTGCTGGCATGGTTCCCTTCCGCTTCAACACCGTTGGCGTCAGCGACGCCATCTCCATGGGCACCCGTGGCATGTGCTACAGCCTCCAGTCCAGGGACCTCATTGCCGACAGCATCGAGACCGTCATGGCAGCGCAGTGGTACGATGGCAATATTTCCATCCCCGGCTGTGACAAAAATATGCCAGGTACTATCATTGCCATGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAACCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATGTTATTCGCAACTCATGCCCTGGGGCTGGAGCCTGTGGTGGAATGTATACAGCCAATACCATGGCTTCTGCAATAGAAGCTATGGGAATGTCTCTTCCCTATAGCTCATCTACACCTGCTGAGGATCCACTAAAGTTGGATGAGTGTCGTTTAGCTGGGAAATATCTTCTTGAGTTACTGAAAATGGACTTGAAGCCCCGAGATATCATCACTCGTAAATCACTACGTAATGCAATGGTTATAGTTATGGCACTTGGTGGATCTACTAATGCTGTGTTACATTTAATTGCTATTGCCAAGTCTGTTGGCATTGATTTGACTCTTGATGATTTTCAGAAGGTTAGCGATGAGGTTCCTTTTATTGCAGATCTTAAGCCTAGTGGGAAATATGTCATGGAAGATGTTCACAAGATTGGAGGGACTCCTGCAGTTATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAAATATTATATGGAAACCTTGCACCACAGGGTTCCGTTGCTAAAATTACTGGAAAAGAAGGGCTGTACTTCTCTGGTCCTGCACTTGTCTTTGAAGGAGAGGAGGCAATGATTGCTGCCATTTCAGAGGATCCTTCGAGTTTTAAGGGGAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGCCTGAGATGTTAACACCAACAAGTGCAATAATGGGTGCAGGTCTTGGAAAGGAAGTTGCATTATTGACTGATGGAAGATTTTCAGGAGGTTCACATGGATTTGTGGTTGGCCATATATGTCCTGAAGCACAGGAAGGTGGTCCAATTGGCTTGATTCAAAATGGAGACGTAATCAATGTTGACATCAAGAATAGGAGAATTGATGTTTTGGTATCAGATGAGGAGATGGAAGCACGCAGGAAAAAGTGGACTGCTCCTCCATACAAAGCTAACCGAGGAGCTCTGTACAAGTATATTAAAAATGTGACACCTGCTTCTAGTGGATGCGTAACAGACGAGTAG
>Glyma.13g207900.1.p sequence-type=predicted peptide transcript=Glyma.13g207900.1 locus=Glyma.13g207900 ID=Glyma.13g207900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQSTLFNPTHSLIPTSPHSIRSNSGHASLSVRASIAVETPTETVKLNKYSSRITEPKSQGASQAVLYGVGLSEDDMAKPQVGVSSVWYEGNTCNMHLLHLSEAVRDGVAAAGMVPFRFNTVGVSDAISMGTRGMCYSLQSRDLIADSIETVMAAQWYDGNISIPGCDKNMPGTIIAMGRLNRPSIMVYGGTIKPGHFEGNTFDIVSAFQCYGEYVSGSINDDQRQNVIRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSTPAEDPLKLDECRLAGKYLLELLKMDLKPRDIITRKSLRNAMVIVMALGGSTNAVLHLIAIAKSVGIDLTLDDFQKVSDEVPFIADLKPSGKYVMEDVHKIGGTPAVIRYLLEQGFLDGDCMTVTGKTLAENAELVPPLSNGQEIIRPVENPIKKTAHIQILYGNLAPQGSVAKITGKEGLYFSGPALVFEGEEAMIAAISEDPSSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHICPEAQEGGPIGLIQNGDVINVDIKNRRIDVLVSDEEMEARRKKWTAPPYKANRGALYKYIKNVTPASSGCVTDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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