SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g207700

Feature Type:gene_model
Chromosome:Gm13
Start:32124827
stop:32128053
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g207700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56170.1AT nuclear factor Y, subunit C2 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0016602GO-cc CCAAT-binding factor complex EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
PTHR10252Panther HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED JGI N/AIEA
PTHR10252:SF6Panther NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATED JGI N/AIEA
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI N/AIEA

Proteins Associated with Glyma.13g207700
LocusGene SymbolProtein Name
NF-YC11 nuclear factor Y transcription factor family protein

Expression Patterns of Glyma.13g207700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g207700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g27790 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g207700
>Glyma.13g207700.1 sequence-type=CDS polypeptide=Glyma.13g207700.1.p locus=Glyma.13g207700 ID=Glyma.13g207700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCAAAACAAGCAAGGTGAAGCAGCAGAAGGAGGGAATATTGGTCATCCAGCACATGGCAAGAACCAAGAAGAGCAATCTAACCCTATGATAGCACCTACAAATCCTCCCAAAAAGAAAAGCTTGGAGGAACAACTCAACGACTTCTGGGCAGCACAGCGCGAGGAAGCTAAGATGACCACTAATTTCAAGACTCACAGCTTGCCCTTGTCGAGGATTAAGAAGATCATTAAGACCGACAAGGATGTAAAGATGATATCTGCTGAGACTCCCGTGGTGTTTGCCAAAGCCTGTGAAATGTTCATCAAGGAGCTCACAATAAGGGCTTGGGCTAATACTGAGGCTCGCAAAGGGAAGATACTTTCCCAGCGTGACCTTGTATCCGCCATCTCCCAGACTGCTTCTTTTGATTTTCTCGATGATATTATGCCCAAGGATGCAGGCTTACCAAGAACAAGCATTGCTTCAACAGAGAATGCTTATCTAAACATGCCACCTCAGCAGAATGTTGCAGGCCTTCCATATGATGCTCCAACCATGGCCTTTCCTAATCTAAACCATCATGCTCCCAATTAG
Predicted protein sequences of Glyma.13g207700
>Glyma.13g207700.1.p sequence-type=predicted peptide transcript=Glyma.13g207700.1 locus=Glyma.13g207700 ID=Glyma.13g207700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDQNKQGEAAEGGNIGHPAHGKNQEEQSNPMIAPTNPPKKKSLEEQLNDFWAAQREEAKMTTNFKTHSLPLSRIKKIIKTDKDVKMISAETPVVFAKACEMFIKELTIRAWANTEARKGKILSQRDLVSAISQTASFDFLDDIMPKDAGLPRTSIASTENAYLNMPPQQNVAGLPYDAPTMAFPNLNHHAPN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo