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Report for Sequence Feature Glyma.13g207500

Feature Type:gene_model
Chromosome:Gm13
Start:32101935
stop:32104489
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g207500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48590.1AT nuclear factor Y, subunit C1 JGI N/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
KOG1657 KOG CCAAT-binding factor, subunit C (HAP5) JGI N/AIEA
PTHR10252Panther HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED JGI N/AIEA
PTHR10252:SF6Panther NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATED JGI N/AIEA
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI N/AIEA

Proteins Associated with Glyma.13g207500
LocusGene SymbolProtein Name
NF-YC09 nuclear factor Y transcription factor family protein

Expression Patterns of Glyma.13g207500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g207500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g27770 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g207500
>Glyma.13g207500.2 sequence-type=transcript locus=Glyma.13g207500 ID=Glyma.13g207500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTGCCTTCTTTCTTTGCTTTCATCAGCACCTTCTTCACTTCAATTCCTCTCTGGTTCGGAACTGAAATCTCAAATTGTTCAAAACAAATTAAACTTTAGTCTAGCTATAACAAGAGTTAGAATGGATCAAAACCAGCATGATCGACTAGCACAAGAAGCACAATATCAATCTAACCCCATGATGGCACCTACCATACTTCCAACTCAGACATATGGTCATTCTCTTTCATCATCATACCCAAGACTACACCCATATGATCCCCAAGCCATGTACCAACTACGACAAGAACCCTTGCAACAACAACTAACCAACTTCTGGGCAAAAAAACGCCAGGAGATTGAGGAGACCACTAGTTTCAAGACTCATAGCTTGCCTTTGGCAAGGATTAAGAAGATTATGAAGGGTGAGGAGGGTGTGAGGATGGTATCAGCTGAGGCTTCTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATGATGGAGCTCACAATAAGGGCTTCAGGTAGTGCTGAGGAGAACCAAAGGAAGATAATTAAGAAGTGTGACGTTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTGGTTGATATTGTCTCAGGGCACAACAAAATAATGGAGCAACAAGGGTTTGTAGGCATACCAAGAATTGGCACTGCTCTAACTCCAACAGAGAATGTTCCTTACTATCAGATGCCCCCTCATCAATCGCTTGTTCCGGGCCCTCCATATGGTTCTTCAGGAATGGTTGTGGGAATGCCTGTTCATTATCAAAATCATCCTGGGCTGCAAACTCCAACAATGGGGCCCACCCCCAATCCACAAAACTCTTCTCGTGATTCGGATTCCTGAACAAATAATATCTACTTAGTGAAAACAATGGTAATTAAGGATACATAAGATCTTCAGCTTTAAGTGAGACCTCTATTTGTTTCTTTCTAATGTTATGTTATAGTCAATGTTGTGTTTCTAATTTGAATTGGATATCAATGTTTGAAACTGTTTTCTTTGCCAATATCTAG
Coding sequences of Glyma.13g207500
>Glyma.13g207500.1 sequence-type=CDS polypeptide=Glyma.13g207500.1.p locus=Glyma.13g207500 ID=Glyma.13g207500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCAAAACCAGCATGATCGACTAGCACAAGAAGCACAATATCAATCTAACCCCATGATGGCACCTACCATACTTCCAACTCAGACATATGGTCATTCTCTTTCATCATCATACCCAAGACTACACCCATATGATCCCCAAGCCATGTACCAACTACGACAAGAACCCTTGCAACAACAACTAACCAACTTCTGGGCAAAAAAACGCCAGGAGATTGAGGAGACCACTAGTTTCAAGACTCATAGCTTGCCTTTGGCAAGGATTAAGAAGATTATGAAGGGTGAGGAGGGTGTGAGGATGGTATCAGCTGAGGCTTCTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATGATGGAGCTCACAATAAGGGCTTCAGGTAGTGCTGAGGAGAACCAAAGGAAGATAATTAAGAAGTGTGACGTTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTGGTTGATATTGTCTCAGGGCACAACAAAATAATGGAGCAACAAGGGTTTGTAGGCATACCAAGAATTGGCACTGCTCTAACTCCAACAGAGAATGTTCCTTACTATCAGATGCCCCCTCATCAATCGCTTGTTCCGGGCCCTCCATATGGTTCTTCAGGAATGGTTGTGGGAATGCCTGTTCATTATCAAAATCATCCTGGGCTGCAAACTCCAACAATGGGGCCCACCCCCAATCCACAAAACTCTTCTCGTGATTCGGATTCCTGA

>Glyma.13g207500.2 sequence-type=CDS polypeptide=Glyma.13g207500.2.p locus=Glyma.13g207500 ID=Glyma.13g207500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCAAAACCAGCATGATCGACTAGCACAAGAAGCACAATATCAATCTAACCCCATGATGGCACCTACCATACTTCCAACTCAGACATATGGTCATTCTCTTTCATCATCATACCCAAGACTACACCCATATGATCCCCAAGCCATGTACCAACTACGACAAGAACCCTTGCAACAACAACTAACCAACTTCTGGGCAAAAAAACGCCAGGAGATTGAGGAGACCACTAGTTTCAAGACTCATAGCTTGCCTTTGGCAAGGATTAAGAAGATTATGAAGGGTGAGGAGGGTGTGAGGATGGTATCAGCTGAGGCTTCTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATGATGGAGCTCACAATAAGGGCTTCAGGTAGTGCTGAGGAGAACCAAAGGAAGATAATTAAGAAGTGTGACGTTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTGGTTGATATTGTCTCAGGGCACAACAAAATAATGGAGCAACAAGGGTTTGTAGGCATACCAAGAATTGGCACTGCTCTAACTCCAACAGAGAATGTTCCTTACTATCAGATGCCCCCTCATCAATCGCTTGTTCCGGGCCCTCCATATGGTTCTTCAGGAATGGTTGTGGGAATGCCTGTTCATTATCAAAATCATCCTGGGCTGCAAACTCCAACAATGGGGCCCACCCCCAATCCACAAAACTCTTCTCGTGATTCGGATTCCTGA
Predicted protein sequences of Glyma.13g207500
>Glyma.13g207500.1.p sequence-type=predicted peptide transcript=Glyma.13g207500.1 locus=Glyma.13g207500 ID=Glyma.13g207500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDQNQHDRLAQEAQYQSNPMMAPTILPTQTYGHSLSSSYPRLHPYDPQAMYQLRQEPLQQQLTNFWAKKRQEIEETTSFKTHSLPLARIKKIMKGEEGVRMVSAEASVVFAKACEMFMMELTIRASGSAEENQRKIIKKCDVASAISRTDVFDFLVDIVSGHNKIMEQQGFVGIPRIGTALTPTENVPYYQMPPHQSLVPGPPYGSSGMVVGMPVHYQNHPGLQTPTMGPTPNPQNSSRDSDS*

>Glyma.13g207500.2.p sequence-type=predicted peptide transcript=Glyma.13g207500.2 locus=Glyma.13g207500 ID=Glyma.13g207500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDQNQHDRLAQEAQYQSNPMMAPTILPTQTYGHSLSSSYPRLHPYDPQAMYQLRQEPLQQQLTNFWAKKRQEIEETTSFKTHSLPLARIKKIMKGEEGVRMVSAEASVVFAKACEMFMMELTIRASGSAEENQRKIIKKCDVASAISRTDVFDFLVDIVSGHNKIMEQQGFVGIPRIGTALTPTENVPYYQMPPHQSLVPGPPYGSSGMVVGMPVHYQNHPGLQTPTMGPTPNPQNSSRDSDS*






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