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Report for Sequence Feature Glyma.13g206600

Feature Type:gene_model
Chromosome:Gm13
Start:32038892
stop:32043379
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g206600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21770.1AT Pseudouridine synthase family protein JGI N/AIEA
GO:0001522GO-bp pseudouridine synthesis EnsemblGenomesN/AIEA
GO:0001522GO-bp pseudouridine synthesis JGI N/AIEA
GO:0008655GO-bp pyrimidine-containing compound salvage EnsemblGenomesN/AIEA
GO:0009451GO-bp RNA modification EnsemblGenomesN/AIEA
GO:0009451GO-bp RNA modification JGI N/AIEA
GO:0019858GO-bp cytosine metabolic process EnsemblGenomesN/AIEA
GO:0046087GO-bp cytidine metabolic process EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0009982GO-mf pseudouridine synthase activity EnsemblGenomesN/AIEA
GO:0009982GO-mf pseudouridine synthase activity JGI N/AIEA
GO:0019239GO-mf deaminase activity EnsemblGenomesN/AIEA
KOG1919 KOG RNA pseudouridylate synthases JGI N/AIEA
PTHR10436Panther RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN JGI N/AIEA
PTHR10436:SF42Panther JGI N/AIEA
PF00849PFAM RNA pseudouridylate synthase JGI N/AIEA
GN7V-65863SoyCyc9-rxn 23S rRNA pseudouridine746 synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g206600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g206600 not represented in the dataset
Glyma.13g206600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g206600
ParalogEvidenceComments
Glyma.15g106100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g206600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g27660 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g206600
>Glyma.13g206600.1 sequence-type=CDS polypeptide=Glyma.13g206600.1.p locus=Glyma.13g206600 ID=Glyma.13g206600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATTCGGTGGCGATGACGGTGGCGTCAATGTTGTTCGCCGGCGGCTGTCGTATCCTCGCCGTGCCTGCGGCGGCGCGCGCCATCCGCATCCCGCGAGCAGCTCTCAGCAGTCACCACAACAAGCACGCTCCGAGTTGGGGCTGTCGGAGTTCACACAACAGTAACACTGCACTCGCCGGTGAAGCCGAATTCTCAACAACCGACGCCGGAAACTTAACCGCTACCTCTTCTTCCGACAGTTTCCCGAAGTATGACCGGTTGCTTCCATGTCCATCGCACAAAAATCCACCGAGAATTGAACACTTAGTTATATCAGAAGGAGGACCTGTGTTAGAACTTATTTGCAAGGCCCTGGATCTTCCTCCTTTGTACGTTTCAGATTTGATTCAATTTGGAGCTGTATACTACGCTCTTGTTTGTCCGCAGCCTCCTCCGAATGCTACTGAAGAGCAAATTAGGGTATTCAAAGAAGTAACGGAACCTTCGGTGTTGCGCAAAAGAGCTTCCATCAAAGGCAAAACTGTGCGAGAGGCACAGAAAACTTTCCGTGTAACTCACGTGGATCAATTTGTTGAGCCAGGGACTTATTTGCGAGTACATGTGCACCCCAAACGCTTTCCTAGGAGCTATGAGATTGATTGGAGATCAAGGATCATAGCTGTGGCGGAGTCCTATGTAGTTTTGGATAAACCTGCTGGTACATCAGTAGGTGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCTACTCGTGCCTTGGGAATGACAACCCCTTTGATGACTACCCATCAAATTGATAATTGCACTGAAGGCTGTGTGGTATTGGCTAGGACTAAAGACTATTGCTCTATCTTTCATGGCAAAATCAGGGAGAAAAAGGTGAAGAAGCTCTATCTCGCTCTTGCAGCTTCTCCTTTGCCAACTGGAATCATTACCCACTATATGCGTCCTATCAACATGGCTCCTAGACTTATTTCTGAAGATTTTATCAAGGGATGGCATCTGTGTCAACTTGAGGTCCTGGAATGTAGAAAGATTCCCTGGCCAACTACTGCTATACAAGACAAGTATTGTGTTGAAGACTGTGGGTGGCCTTCTCAAGATTATGCATACGAGTGCAAAATCAACCTTCTTACTGGTAAAACACATCAGATTCGAGCTCAATTTGCTGCCTATAAGGCACCATTAATTGGTGATTCTATGTATATGCCAGCTGCAATTGCGGATGTGAGTAATCCTGGACTTAATCCATTTGGAAAATACAAGAAAGATTTCAGTAGTGAGAGTGAAAAAGAAACAGCTGTTGTAAATTGGATGGCACAACATGGAAAAGAGCCGAGTGTTGCAATTGGCCTTCAAGCATGTCAAATTTCATGGGATGATGATGAACACTTTTATGAAGCTGGTTTACCTTGGTGGAGGTGTTAA
Predicted protein sequences of Glyma.13g206600
>Glyma.13g206600.1.p sequence-type=predicted peptide transcript=Glyma.13g206600.1 locus=Glyma.13g206600 ID=Glyma.13g206600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNSVAMTVASMLFAGGCRILAVPAAARAIRIPRAALSSHHNKHAPSWGCRSSHNSNTALAGEAEFSTTDAGNLTATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLPPLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALAASPLPTGIITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYKKDFSSESEKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWRC*






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