SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g202300

Feature Type:gene_model
Chromosome:Gm13
Start:31596684
stop:31603118
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g202300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20910.1AT nuclear factor Y, subunit A9 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0016602GO-cc CCAAT-binding factor complex EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
KOG1561 KOG CCAAT-binding factor, subunit B (HAP2) JGI N/AIEA
PTHR12632Panther TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED JGI N/AIEA
PTHR12632:SF5Panther JGI N/AIEA
PF02045PFAM CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B JGI N/AIEA

Proteins Associated with Glyma.13g202300
LocusGene SymbolProtein Name
NF-YA13 nuclear transcription factor Y subunit A-13

Expression Patterns of Glyma.13g202300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g202300
ParalogEvidenceComments
Glyma.12g236800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g202300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g27230 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g202300
>Glyma.13g202300.2 sequence-type=transcript locus=Glyma.13g202300 ID=Glyma.13g202300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAAAAGTTAATTCTTATTCTCATCACTGCATCATGCTCCATTGTCTCTCTTGAGGTTGCAGACTTAGAGAGAGAGAGAGATAATGGGTCTCATTTCAATGCAATTCAGGTTCTGAAAACCAAAGCTTTTCATAGGAAAAGTTGTGCTAAGATGCCGGGGAAAGCTGACACTGATGATTGGCGAGTAGAGCGGGGTGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCATCAGCCTTGGCGGTGTGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCTGATCAGTTAAATGGTTCAATCGTGAATGGTATCACGCGGTCTGAGACCAATGATAAGTCAGGTGAAGGTGTTGCCAAAGAATACCAAAACATCAAACATGCCGTGTTGTCAACCCCATTTACCATGGACAAACATCTTGCTCCAAATCCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGCATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAACCCTCAATTGTACGGAATGTATCATGCTAGAATGCCTTTGCCACCTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATCAAAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCATGCCATGAGAAGGGCTAGAGGCAATGGTGGTCGCTTTCTCAACAAAAAGAAGCTCGAAAATTACAATTCTGATGCCACTTCAGACATTGGGCAAAATACTGGTGCAAACCCCTCAACAAACTCACCTAACACTCAACATTTGTTCACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAAGCCACGGTTCAGGACATGCACAGAGTGGAGAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTGCAGAACTGTACCATTCACAAGCAAATGGAAAAAAGGAGGGAAACTGCTTTGGTAAAGAGAGGGACCCTAATAATGGGGCTTTCAAATGACACTTCGCCCAGCCATACAGCAACAGTGAAGATGAAGGGTTTTTATCTCATCCAACTTGTGATGCTGTATTGAAGGCAATTCATTCTTGGCTTAGTTAAGTGGTGAGACCAGTGACATGGAGTACACTCTGCCTTGTTTGGTCTCTCCCCTTGCATTTGTTTCTCTTTACAAGTCCATATGTAAAAATGGATAACGGAAAGAAAAAGAAAAATCACTTTTGTTTGAGAACTTTTTTAAGTTTGTTTTTAACTGTGTGAAGGTTTCATAAAATTGTGGACTGACTTGTGTGACATATGCTCCACAAAACCTTAAAACTTTCGTCTATTTTGTCCTATATCTCCTTGCACATTATTAATCTAAATTGGTGCATATTTTCTATAGTAATATTTGTATTCTTGATGCTTGTGTATGTGTTTCCATATGAAATTATACGCGAGGCATGTGAATGAAAATAAAATTTTAGTGGAG
Coding sequences of Glyma.13g202300
>Glyma.13g202300.1 sequence-type=CDS polypeptide=Glyma.13g202300.1.p locus=Glyma.13g202300 ID=Glyma.13g202300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGGGGAAAGCTGACACTGATGATTGGCGAGTAGAGCGGGGTGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCATCAGCCTTGGCGGTGTGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCTGATCAGTTAAATGGTTCAATCGTGAATGGTATCACGCGGTCTGAGACCAATGATAAGTCAGGTGAAGGTGTTGCCAAAGAATACCAAAACATCAAACATGCCGTGTTGTCAACCCCATTTACCATGGACAAACATCTTGCTCCAAATCCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGCATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAACCCTCAATTGTACGGAATGTATCATGCTAGAATGCCTTTGCCACCTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATCAAAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCATGCCATGAGAAGGGCTAGAGGCAATGGTGGTCGCTTTCTCAACAAAAAGAAGCTCGAAAATTACAATTCTGATGCCACTTCAGACATTGGGCAAAATACTGGTGCAAACCCCTCAACAAACTCACCTAACACTCAACATTTGTTCACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAAGCCACGGTTCAGGACATGCACAGAGTGGAGAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTGCAGAACTGTACCATTCACAAGCAAATGGAAAAAAGGAGGGAAACTGCTTTGGTAAAGAGAGGGACCCTAATAATGGGGCTTTCAAATGA

>Glyma.13g202300.2 sequence-type=CDS polypeptide=Glyma.13g202300.2.p locus=Glyma.13g202300 ID=Glyma.13g202300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGGGGAAAGCTGACACTGATGATTGGCGAGTAGAGCGGGGTGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCATCAGCCTTGGCGGTGTGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCTGATCAGTTAAATGGTTCAATCGTGAATGGTATCACGCGGTCTGAGACCAATGATAAGTCAGGTGAAGGTGTTGCCAAAGAATACCAAAACATCAAACATGCCGTGTTGTCAACCCCATTTACCATGGACAAACATCTTGCTCCAAATCCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGCATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAACCCTCAATTGTACGGAATGTATCATGCTAGAATGCCTTTGCCACCTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATCAAAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCATGCCATGAGAAGGGCTAGAGGCAATGGTGGTCGCTTTCTCAACAAAAAGAAGCTCGAAAATTACAATTCTGATGCCACTTCAGACATTGGGCAAAATACTGGTGCAAACCCCTCAACAAACTCACCTAACACTCAACATTTGTTCACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAAGCCACGGTTCAGGACATGCACAGAGTGGAGAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTGCAGAACTGTACCATTCACAAGCAAATGGAAAAAAGGAGGGAAACTGCTTTGGTAAAGAGAGGGACCCTAATAATGGGGCTTTCAAATGA
Predicted protein sequences of Glyma.13g202300
>Glyma.13g202300.1.p sequence-type=predicted peptide transcript=Glyma.13g202300.1 locus=Glyma.13g202300 ID=Glyma.13g202300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPGKADTDDWRVERGEQIQFQSSIYSHHQPWRCGVGENASKSSSADQLNGSIVNGITRSETNDKSGEGVAKEYQNIKHAVLSTPFTMDKHLAPNPQMELVGHSVVLTSPYSDAQHGQILTTYGQQVMINPQLYGMYHARMPLPPEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNKKKLENYNSDATSDIGQNTGANPSTNSPNTQHLFTNNENLGSSNASQATVQDMHRVESFNIGYHNGNGLAELYHSQANGKKEGNCFGKERDPNNGAFK*

>Glyma.13g202300.2.p sequence-type=predicted peptide transcript=Glyma.13g202300.2 locus=Glyma.13g202300 ID=Glyma.13g202300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPGKADTDDWRVERGEQIQFQSSIYSHHQPWRCGVGENASKSSSADQLNGSIVNGITRSETNDKSGEGVAKEYQNIKHAVLSTPFTMDKHLAPNPQMELVGHSVVLTSPYSDAQHGQILTTYGQQVMINPQLYGMYHARMPLPPEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNKKKLENYNSDATSDIGQNTGANPSTNSPNTQHLFTNNENLGSSNASQATVQDMHRVESFNIGYHNGNGLAELYHSQANGKKEGNCFGKERDPNNGAFK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo