Glyma.13g198800

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Report for Sequence Feature Glyma.13g198800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	31252110
stop:	31257733
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g198800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61790.1	AT	Protein with RING/U-box and TRAF-like domains	JGI	N/A	IEA
AT4G27880.1	AT	Protein with RING/U-box and TRAF-like domains	JGI	N/A	IEA
GO:0006511	GO-bp	ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0006511	GO-bp	ubiquitin-dependent protein catabolic process	JGI	N/A	IEA
GO:0007275	GO-bp	multicellular organism development	EnsemblGenomes	N/A	IEA
GO:0007275	GO-bp	multicellular organismal development	JGI	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0061630	GO-mf	ubiquitin protein ligase activity	EnsemblGenomes	N/A	IEA
KOG3002	KOG	Zn finger protein	JGI	N/A	IEA
PTHR10315	Panther	SEVEN IN ABSENTIA HOMOLOG	JGI	N/A	IEA
PF03145	PFAM	Seven in absentia protein family	JGI	N/A	IEA

Expression Patterns of Glyma.13g198800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g198800 not represented in the dataset	Glyma.13g198800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g198800

Paralog	Evidence	Comments
Glyma.15g237300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g198800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g26890	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g198800

Limit To All Plant Sequences

>Glyma.13g198800.2 sequence-type=transcript locus=Glyma.13g198800 ID=Glyma.13g198800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCTTAAGCCTTTTCCTTCTTCCATGTTGTATTtctctctctctctctcttcgtgctcgcatacgctcttctctctctttctTTAATTTGAAAATCTTTGATCAACTCTAGACGCGCATTCTTCATTTATTACAGTCTGTTGTAAAACCCACTAAAACCAACCCCCCCTCTCTCTCTGGTTTCATTAATTTTCTTCTTCTGTGATGCCCTTTTGATCAATCCATCATTCCAGGGCAGCCAGTAGTTGCTTTTACTAGCATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATGATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGTGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGAAGGGAGAGAGATGTCCTTCCACTAGCAATTATATATAGGCTGATAGTTTGTAGTGAAACTCGTTTGTAGTGATATATGTACCTTCTGGTCTTCTAATTGTGTTTTGTAATTTAGGAGGCAAACTCTCTTTGCTTATCCTTACATCAAATACACGAACAGGAAGTTGTACCTCTAATCATTATGATGATTACGCGATAGAGATTTAGAACCTTAACGTGTTCTATATATATTATTTTTGTTCTATGAATGTCAATGATTGCAAGCACTTGAGAAAA

>Glyma.13g198800.3 sequence-type=transcript locus=Glyma.13g198800 ID=Glyma.13g198800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCTTAAGCCTTTTCCTTCTTCCATGTTGTATTtctctctctctctctcttcgtgctcgcatacgctcttctctctctttctTTAATTTGAAAATCTTTGATCAACTCTAGACGCGCATTCTTCATTTATTACAGTCTGTTGTAAAACCCACTAAAACCAACCCCCCCTCTCTCTCTGGTTTCATTAATTTTCTTCTTCTGTGATGCCCTTTTGATCAATCCATCATTCCAGGGCAGCCAGTAGTTGCTTTTACTAGCATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTATTGTTTTCTAAACTTTGTTCTGCCTGCCTTCTATTGGCTCAGTAAATTCACTAGACTTTTAGTGCTTGATAGATTGTGTACTTTTGAGGCATGTTTTTGGATCTACGTGCGTTGGTCTTCATCAGTTAATAAGTATATAAAATTTAATCAAACCTTGTAACTTATGTTTAAACAAGAAAAATCCAATATTGCCAATACTGGAACATCTTGGAAACTATGAGCATCTTTTTTCAAAGTTGTATTCTCAAGAAACTATTAATTTACAGCATTGCTTCTTTGCCTTCC

Coding sequences of Glyma.13g198800

Limit To All Plant Sequences

>Glyma.13g198800.1 sequence-type=CDS polypeptide=Glyma.13g198800.1.p locus=Glyma.13g198800 ID=Glyma.13g198800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGGTGTGAAGATGAAAGAGTCACGGCTACAATCATCAGTTTGGAAATTCAAACGAAAACACAAGGGAAAAAGAAAAAGAAGAAAGAAAAGGCAAGTGAAGGAATAGGGCAGCCAGTAGTTGCTTTTACTAGCATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATGATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGTGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGA

>Glyma.13g198800.2 sequence-type=CDS polypeptide=Glyma.13g198800.2.p locus=Glyma.13g198800 ID=Glyma.13g198800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATGATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGTGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGA

>Glyma.13g198800.3 sequence-type=CDS polypeptide=Glyma.13g198800.3.p locus=Glyma.13g198800 ID=Glyma.13g198800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTATTGTTTTCTAAACTTTGTTCTGCCTGCCTTCTATTGGCTCAGTAA

Predicted protein sequences of Glyma.13g198800

Limit To All Plant Sequences

>Glyma.13g198800.1.p sequence-type=predicted peptide transcript=Glyma.13g198800.1 locus=Glyma.13g198800 ID=Glyma.13g198800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRCEDERVTATIISLEIQTKTQGKKKKKKEKASEGIGQPVVAFTSMASSNLFFDDIRSKVDVDPPQNEESTDVGELLNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDDEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ*

>Glyma.13g198800.2.p sequence-type=predicted peptide transcript=Glyma.13g198800.2 locus=Glyma.13g198800 ID=Glyma.13g198800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSNLFFDDIRSKVDVDPPQNEESTDVGELLNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDDEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ*

>Glyma.13g198800.3.p sequence-type=predicted peptide transcript=Glyma.13g198800.3 locus=Glyma.13g198800 ID=Glyma.13g198800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSNLFFDDIRSKVDVDPPQNEESTDVGELLNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVLFSKLCSACLLLAQ*

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