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Report for Sequence Feature Glyma.13g198800

Feature Type:gene_model
Chromosome:Gm13
Start:31252110
stop:31257733
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g198800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61790.1AT Protein with RING/U-box and TRAF-like domains JGI N/AIEA
AT4G27880.1AT Protein with RING/U-box and TRAF-like domains JGI N/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process JGI N/AIEA
GO:0007275GO-bp multicellular organism development EnsemblGenomesN/AIEA
GO:0007275GO-bp multicellular organismal development JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG3002 KOG Zn finger protein JGI N/AIEA
PTHR10315Panther SEVEN IN ABSENTIA HOMOLOG JGI N/AIEA
PF03145PFAM Seven in absentia protein family JGI N/AIEA

Expression Patterns of Glyma.13g198800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g198800
ParalogEvidenceComments
Glyma.15g237300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g198800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g26890 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g198800
>Glyma.13g198800.2 sequence-type=transcript locus=Glyma.13g198800 ID=Glyma.13g198800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCTTAAGCCTTTTCCTTCTTCCATGTTGTATTtctctctctctctctcttcgtgctcgcatacgctcttctctctctttctTTAATTTGAAAATCTTTGATCAACTCTAGACGCGCATTCTTCATTTATTACAGTCTGTTGTAAAACCCACTAAAACCAACCCCCCCTCTCTCTCTGGTTTCATTAATTTTCTTCTTCTGTGATGCCCTTTTGATCAATCCATCATTCCAGGGCAGCCAGTAGTTGCTTTTACTAGCATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATGATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGTGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGAAGGGAGAGAGATGTCCTTCCACTAGCAATTATATATAGGCTGATAGTTTGTAGTGAAACTCGTTTGTAGTGATATATGTACCTTCTGGTCTTCTAATTGTGTTTTGTAATTTAGGAGGCAAACTCTCTTTGCTTATCCTTACATCAAATACACGAACAGGAAGTTGTACCTCTAATCATTATGATGATTACGCGATAGAGATTTAGAACCTTAACGTGTTCTATATATATTATTTTTGTTCTATGAATGTCAATGATTGCAAGCACTTGAGAAAA

>Glyma.13g198800.3 sequence-type=transcript locus=Glyma.13g198800 ID=Glyma.13g198800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCTTAAGCCTTTTCCTTCTTCCATGTTGTATTtctctctctctctctcttcgtgctcgcatacgctcttctctctctttctTTAATTTGAAAATCTTTGATCAACTCTAGACGCGCATTCTTCATTTATTACAGTCTGTTGTAAAACCCACTAAAACCAACCCCCCCTCTCTCTCTGGTTTCATTAATTTTCTTCTTCTGTGATGCCCTTTTGATCAATCCATCATTCCAGGGCAGCCAGTAGTTGCTTTTACTAGCATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTATTGTTTTCTAAACTTTGTTCTGCCTGCCTTCTATTGGCTCAGTAAATTCACTAGACTTTTAGTGCTTGATAGATTGTGTACTTTTGAGGCATGTTTTTGGATCTACGTGCGTTGGTCTTCATCAGTTAATAAGTATATAAAATTTAATCAAACCTTGTAACTTATGTTTAAACAAGAAAAATCCAATATTGCCAATACTGGAACATCTTGGAAACTATGAGCATCTTTTTTCAAAGTTGTATTCTCAAGAAACTATTAATTTACAGCATTGCTTCTTTGCCTTCC
Coding sequences of Glyma.13g198800
>Glyma.13g198800.1 sequence-type=CDS polypeptide=Glyma.13g198800.1.p locus=Glyma.13g198800 ID=Glyma.13g198800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGGTGTGAAGATGAAAGAGTCACGGCTACAATCATCAGTTTGGAAATTCAAACGAAAACACAAGGGAAAAAGAAAAAGAAGAAAGAAAAGGCAAGTGAAGGAATAGGGCAGCCAGTAGTTGCTTTTACTAGCATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATGATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGTGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGA

>Glyma.13g198800.2 sequence-type=CDS polypeptide=Glyma.13g198800.2.p locus=Glyma.13g198800 ID=Glyma.13g198800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATGATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGTGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGA

>Glyma.13g198800.3 sequence-type=CDS polypeptide=Glyma.13g198800.3.p locus=Glyma.13g198800 ID=Glyma.13g198800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTATTGTTTTCTAAACTTTGTTCTGCCTGCCTTCTATTGGCTCAGTAA
Predicted protein sequences of Glyma.13g198800
>Glyma.13g198800.1.p sequence-type=predicted peptide transcript=Glyma.13g198800.1 locus=Glyma.13g198800 ID=Glyma.13g198800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRCEDERVTATIISLEIQTKTQGKKKKKKEKASEGIGQPVVAFTSMASSNLFFDDIRSKVDVDPPQNEESTDVGELLNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDDEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ*

>Glyma.13g198800.2.p sequence-type=predicted peptide transcript=Glyma.13g198800.2 locus=Glyma.13g198800 ID=Glyma.13g198800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSNLFFDDIRSKVDVDPPQNEESTDVGELLNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDDEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ*

>Glyma.13g198800.3.p sequence-type=predicted peptide transcript=Glyma.13g198800.3 locus=Glyma.13g198800 ID=Glyma.13g198800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSNLFFDDIRSKVDVDPPQNEESTDVGELLNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVLFSKLCSACLLLAQ*






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