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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12280.2 | AT | retinoblastoma-related 1 | JGI | N/A | IEA |
| GO:0006357 | GO-bp | regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0006915 | GO-bp | apoptotic process | EnsemblGenomes | N/A | IEA |
| GO:0008285 | GO-bp | negative regulation of cell proliferation | EnsemblGenomes | N/A | IEA |
| GO:0045892 | GO-bp | negative regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0051726 | GO-bp | regulation of cell cycle | EnsemblGenomes | N/A | IEA |
| GO:0051726 | GO-bp | regulation of cell cycle | JGI | N/A | IEA |
| GO:2000134 | GO-bp | negative regulation of G1/S transition of mitotic cell cycle | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | JGI | N/A | IEA |
| GO:0035189 | GO-cc | Rb-E2F complex | EnsemblGenomes | N/A | IEA |
| GO:0008134 | GO-mf | transcription factor binding | EnsemblGenomes | N/A | IEA |
| KOG1010 | KOG | Rb (Retinoblastoma tumor suppressor)-related protein | JGI | N/A | IEA |
| PTHR13742 | Panther | RETINOBLASTOMA-ASSOCIATED PROTEIN (RB)-RELATED | JGI | N/A | IEA |
| PTHR13742:SF1 | Panther | JGI | N/A | IEA | |
| PF01857 | PFAM | Retinoblastoma-associated protein B domain | JGI | N/A | IEA |
| PF01858 | PFAM | Retinoblastoma-associated protein A domain | JGI | N/A | IEA |
| PF11934 | PFAM | Domain of unknown function (DUF3452) | JGI | N/A | IEA |
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Glyma.13g192400 not represented in the dataset |
Glyma.13g192400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g230300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g26170 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g192400.1 sequence-type=CDS polypeptide=Glyma.13g192400.1.p locus=Glyma.13g192400 ID=Glyma.13g192400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGTCCTCCTCCAGCTGAATCCAACGCCATGGAAGACGGCAAGCCCGAGAATGGCGGCGACCAAGTCGAGTCTCGCTTCTTTGAGTTCTGCAAGAATGGGCTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAACGAATCTGTTTGGAGAAACCAAGCATATTCTACTGTCAAATTTTTCGTCAATGGGAAACGGAACGTCTGAAGAAGCAGAGAGGTATTGGTTTGCTTTTATTTTGTACTCTGTCAAAAAATTGATCCAGAAAAATGATGAGGGTGAGAAGGAAGACACTGAGAACACTGGGCTTAGCTTGTGTCGTATATTGAGAGCAACAAAGCTTAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGGCAACTGACACAAATGCTGAAATAAACTCACCTATTACTGTTCATGCATCTGAATATCATCGATTTGGATGGTTGCTTTTCCTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTAGTGACTTGCACTAATGGTTTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGATTTCGGAATTTCAACATTCATGACTCCTCACGCTTTGTTAAGAAAAGTAACAAAGGTGTGGACCTCCTTGCATCACTTTGCAACATATACAACACTTCTGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGCAGCCTTGCTTGGCATCTGAATGTGAAACCGAAAACCTAGAGAATATCGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAATCGTCTCTACCTTCTAGTCTAAGTATGTTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAATTGGATGAAAGGTTATTCATTAATGAGGATGACAGTCTATTAGCTTCAGTAAGCTTATCTGGAGGTTCTGTTTCAGCTGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCACACCGCTCCCCCGCATCACATGCTAATGGCATCCCAGGTAGTGCAAACTCAAAGATGGCGGCCACCCCTGTAAGCACAGCAATGACTACTGCGAAGTGGCTTCGAACTGTCATTTCTCCACTTCCATCAAAGCCCTCGCCAGAGCTGGAACGATTTTTGACATCATGTGATAGAGATGCTACAAGTGATGTGGTTCGCAGAGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTTATGGACAATATATGGGCCGAACAACGAAGACTGGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAGTTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTAGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAATTGAGAAGACATCTGAATTCATTGGAAGAACGTCTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAACTCTTTGGCAGTTGCCAGACCTTCCCTTTCTGCAGAGATAAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGACTGCCGCCAGTGCCTACCTTGCCCAAACTTGAAAGCTCTTCAAATCAGAATGGGGATATCAGATCACCAAAGCGAAATGTTTTAATGGAAAGAAATTCTTTCACTTCACCAGTGAAAGATCGCCTTCTTCCCTTTAACAGCCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGCCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATTTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAGTTATCTCAGCAGATAAGGGAGAATGTATATTCTCTTTTCCAGCGGATCCTTAATCAGTGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAACTCAACCTAACTTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACACTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATTGGCTCGCCGAAATGGGAGAACAGGACAGGAGCATATTGACATAATTACCTTTTACAATGAAATATTCATTCCTTCTGTAAAGCCACTGCTTGTTGAACTTGGCCCTGCTGGACCAACTACAAAAAGCGACCGAATACCTGAAATTAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGGTCTCCTAAAATATCACCTTTCCCAACCCTTCCTGATATGTCTCCAAAAAAAGTGTCAGCCACACATAACGTATATGTCTCTCCATTACGATCGTCCAAGATGGAGGCTCTAATATCACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCGTCAAAAGACCTGACCGCCATCAATAACCGTTTGAATGGCAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATATCGGGTTGGTGAGTGACTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGCTGTGCTTCATCATCAGGTGCACCATTGAAATCAGAGCAACCTGACTCCTAG
>Glyma.13g192400.1.p sequence-type=predicted peptide transcript=Glyma.13g192400.1 locus=Glyma.13g192400 ID=Glyma.13g192400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSPPPAESNAMEDGKPENGGDQVESRFFEFCKNGLALEEKSCKEATNLFGETKHILLSNFSSMGNGTSEEAERYWFAFILYSVKKLIQKNDEGEKEDTENTGLSLCRILRATKLNIADFFKELPQFVVKAGPTLSNLYGTDWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVATDTNAEINSPITVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKSNKGVDLLASLCNIYNTSEDELRKTMEKANNVIADILKKQPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLSMLEKDYDYMIRNKSELDERLFINEDDSLLASVSLSGGSVSAGGVKRKFDSMASPAKTITSPLSPHRSPASHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLPSKPSPELERFLTSCDRDATSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPSLSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPTLPKLESSSNQNGDIRSPKRNVLMERNSFTSPVKDRLLPFNSLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFKEIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQEHIDIITFYNEIFIPSVKPLLVELGPAGPTTKSDRIPEINKNDGHLAQCPGSPKISPFPTLPDMSPKKVSATHNVYVSPLRSSKMEALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDIGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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