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Report for Sequence Feature Glyma.13g192400

Feature Type:gene_model
Chromosome:Gm13
Start:30565167
stop:30573329
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g192400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12280.2AT retinoblastoma-related 1 JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006915GO-bp apoptotic process EnsemblGenomesN/AIEA
GO:0008285GO-bp negative regulation of cell proliferation EnsemblGenomesN/AIEA
GO:0045892GO-bp negative regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0051726GO-bp regulation of cell cycle EnsemblGenomesN/AIEA
GO:0051726GO-bp regulation of cell cycle JGI N/AIEA
GO:2000134GO-bp negative regulation of G1/S transition of mitotic cell cycle EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0035189GO-cc Rb-E2F complex EnsemblGenomesN/AIEA
GO:0008134GO-mf transcription factor binding EnsemblGenomesN/AIEA
KOG1010 KOG Rb (Retinoblastoma tumor suppressor)-related protein JGI N/AIEA
PTHR13742Panther RETINOBLASTOMA-ASSOCIATED PROTEIN (RB)-RELATED JGI N/AIEA
PTHR13742:SF1Panther JGI N/AIEA
PF01857PFAM Retinoblastoma-associated protein B domain JGI N/AIEA
PF01858PFAM Retinoblastoma-associated protein A domain JGI N/AIEA
PF11934PFAM Domain of unknown function (DUF3452) JGI N/AIEA

Expression Patterns of Glyma.13g192400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g192400
ParalogEvidenceComments
Glyma.15g230300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g192400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g26170 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g192400
>Glyma.13g192400.1 sequence-type=CDS polypeptide=Glyma.13g192400.1.p locus=Glyma.13g192400 ID=Glyma.13g192400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTCCTCCTCCAGCTGAATCCAACGCCATGGAAGACGGCAAGCCCGAGAATGGCGGCGACCAAGTCGAGTCTCGCTTCTTTGAGTTCTGCAAGAATGGGCTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAACGAATCTGTTTGGAGAAACCAAGCATATTCTACTGTCAAATTTTTCGTCAATGGGAAACGGAACGTCTGAAGAAGCAGAGAGGTATTGGTTTGCTTTTATTTTGTACTCTGTCAAAAAATTGATCCAGAAAAATGATGAGGGTGAGAAGGAAGACACTGAGAACACTGGGCTTAGCTTGTGTCGTATATTGAGAGCAACAAAGCTTAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGGCAACTGACACAAATGCTGAAATAAACTCACCTATTACTGTTCATGCATCTGAATATCATCGATTTGGATGGTTGCTTTTCCTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTAGTGACTTGCACTAATGGTTTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGATTTCGGAATTTCAACATTCATGACTCCTCACGCTTTGTTAAGAAAAGTAACAAAGGTGTGGACCTCCTTGCATCACTTTGCAACATATACAACACTTCTGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGCAGCCTTGCTTGGCATCTGAATGTGAAACCGAAAACCTAGAGAATATCGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAATCGTCTCTACCTTCTAGTCTAAGTATGTTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAATTGGATGAAAGGTTATTCATTAATGAGGATGACAGTCTATTAGCTTCAGTAAGCTTATCTGGAGGTTCTGTTTCAGCTGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCACACCGCTCCCCCGCATCACATGCTAATGGCATCCCAGGTAGTGCAAACTCAAAGATGGCGGCCACCCCTGTAAGCACAGCAATGACTACTGCGAAGTGGCTTCGAACTGTCATTTCTCCACTTCCATCAAAGCCCTCGCCAGAGCTGGAACGATTTTTGACATCATGTGATAGAGATGCTACAAGTGATGTGGTTCGCAGAGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTTATGGACAATATATGGGCCGAACAACGAAGACTGGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAGTTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTAGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAATTGAGAAGACATCTGAATTCATTGGAAGAACGTCTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAACTCTTTGGCAGTTGCCAGACCTTCCCTTTCTGCAGAGATAAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGACTGCCGCCAGTGCCTACCTTGCCCAAACTTGAAAGCTCTTCAAATCAGAATGGGGATATCAGATCACCAAAGCGAAATGTTTTAATGGAAAGAAATTCTTTCACTTCACCAGTGAAAGATCGCCTTCTTCCCTTTAACAGCCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGCCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATTTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAGTTATCTCAGCAGATAAGGGAGAATGTATATTCTCTTTTCCAGCGGATCCTTAATCAGTGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAACTCAACCTAACTTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACACTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATTGGCTCGCCGAAATGGGAGAACAGGACAGGAGCATATTGACATAATTACCTTTTACAATGAAATATTCATTCCTTCTGTAAAGCCACTGCTTGTTGAACTTGGCCCTGCTGGACCAACTACAAAAAGCGACCGAATACCTGAAATTAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGGTCTCCTAAAATATCACCTTTCCCAACCCTTCCTGATATGTCTCCAAAAAAAGTGTCAGCCACACATAACGTATATGTCTCTCCATTACGATCGTCCAAGATGGAGGCTCTAATATCACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCGTCAAAAGACCTGACCGCCATCAATAACCGTTTGAATGGCAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATATCGGGTTGGTGAGTGACTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGCTGTGCTTCATCATCAGGTGCACCATTGAAATCAGAGCAACCTGACTCCTAG
Predicted protein sequences of Glyma.13g192400
>Glyma.13g192400.1.p sequence-type=predicted peptide transcript=Glyma.13g192400.1 locus=Glyma.13g192400 ID=Glyma.13g192400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSPPPAESNAMEDGKPENGGDQVESRFFEFCKNGLALEEKSCKEATNLFGETKHILLSNFSSMGNGTSEEAERYWFAFILYSVKKLIQKNDEGEKEDTENTGLSLCRILRATKLNIADFFKELPQFVVKAGPTLSNLYGTDWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVATDTNAEINSPITVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKSNKGVDLLASLCNIYNTSEDELRKTMEKANNVIADILKKQPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLSMLEKDYDYMIRNKSELDERLFINEDDSLLASVSLSGGSVSAGGVKRKFDSMASPAKTITSPLSPHRSPASHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLPSKPSPELERFLTSCDRDATSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPSLSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPTLPKLESSSNQNGDIRSPKRNVLMERNSFTSPVKDRLLPFNSLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFKEIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQEHIDIITFYNEIFIPSVKPLLVELGPAGPTTKSDRIPEINKNDGHLAQCPGSPKISPFPTLPDMSPKKVSATHNVYVSPLRSSKMEALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDIGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS*






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