SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g189400

Feature Type:gene_model
Chromosome:Gm13
Start:30286518
stop:30295433
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g189400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12480.1AT nuclear factor Y, subunit C11 JGI N/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
KOG1659 KOG Class 2 transcription repressor NC2, alpha subunit (DRAP1) JGI N/AIEA
PTHR10252Panther HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED JGI N/AIEA
PTHR10252:SF5Panther DR1-ASSOCIATED COREPRESSOR JGI N/AIEA
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI N/AIEA

Expression Patterns of Glyma.13g189400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g189400
ParalogEvidenceComments
Glyma.15g227300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g189400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g25860 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g189400
>Glyma.13g189400.1 sequence-type=CDS polypeptide=Glyma.13g189400.1.p locus=Glyma.13g189400 ID=Glyma.13g189400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCTGATGAGGATGTTGGAAAGATAGCACTCGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGGGTTCCTGACTACAGCCATGGCCATGGCCATGCTGAGGCTGGTCCTGATGATCGGGCCATTGCAAAAAGAAGGAAAGCTGTTGGTGATGATGGTAATGACAGTGATGAAGAGGCTAAGAGGAGCAAGATGCATGAGTTGGGCCACACTGGCAGTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGGCGACCACCTTTAAATAGAGAGATATATCATCAGGATGCTGAATCTGAGCCTTGCACTTCTGTTCAGCCAAGCAACCCACAAAATACAAACACAAGTGTTGCAATGGATAGTGGTTCTGAGTCAAAGGAAATACCAAAGGAGCAGAACATTGCAGTTCCTGTTGAAAGCACTGATTCGCTCCGGAACATCGATCTGAATGCCATTACGAATGAAAACGATGACAAAAAGGCTAGCGCAGCAGCGGATGCCTCTGTGCCTGAACCTCCAACAGAGAGCAAGCATGAAGAAATTCCAGGGTGGTCTCTTTCTGATGTGGACAAGATGGCCATTGATTCGCTGCAGCTTGCACAACTTGGTAGGCCACTAGAAGAGGATGAAGAAGACTATGATGAAGAGGAGGGGTAA
Predicted protein sequences of Glyma.13g189400
>Glyma.13g189400.1.p sequence-type=predicted peptide transcript=Glyma.13g189400.1 locus=Glyma.13g189400 ID=Glyma.13g189400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYSHGHGHAEAGPDDRAIAKRRKAVGDDGNDSDEEAKRSKMHELGHTGSTGRGRGRGRGRGRGRGRPPLNREIYHQDAESEPCTSVQPSNPQNTNTSVAMDSGSESKEIPKEQNIAVPVESTDSLRNIDLNAITNENDDKKASAAADASVPEPPTESKHEEIPGWSLSDVDKMAIDSLQLAQLGRPLEEDEEDYDEEEG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo