Glyma.13g181200

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.13g181200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.13g181200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.13g181200

Feature Type:	gene_model
Chromosome:	Gm13
Start:	29437662
stop:	29457349
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g181200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04920.2	AT	sensitive to freezing 6	JGI	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0016592	GO-cc	mediator complex	EnsemblGenomes	N/A	IEA

Proteins Associated with Glyma.13g181200

Locus	Gene Symbol	Protein Name
	MED16-1	Mediator Complex 16 gene 1

Expression Patterns of Glyma.13g181200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g181200 not represented in the dataset	Glyma.13g181200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.13g181200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g24970	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.13g181200

Limit To All Plant Sequences

>Glyma.13g181200.1 sequence-type=CDS polypeptide=Glyma.13g181200.1.p locus=Glyma.13g181200 ID=Glyma.13g181200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATCAAATTGGTGGGACAAAGGACCCGGAGGCCGAGCCTGTCTCTCCGTCTCTGCCCCAACCCCAAGACACTCCCAAGAGCTCCGACAAAACCGATTCCGCCACCGCTGTCGTTGTCGTCGCCGCTGCCTCCGAAGAGCAGGAGGTCGGAGAGGAGGAAAAGCCGCCGCCTCCGCCTGTCCCGATGGAGGAAGATCCTGTCAACCCCGCCACCGTTTTCTCCATCAGGCTCAAGCAGCCTAGGTCCAATTTGCTGCACAAGATGAGTGTGCCTGAACTTTGTCGCAATTTTAGTGCTGTTTCGTGGTGCGGAAAACTGAATGCTATAGCTTGTGCAGCAGAAACGTGTGCCAGAATTCCAAGTTCAACTGCTAATCCACCATTTTGGATCCCTATACATATTGTGATCCCAGAGAGGCCGACTGAATGTGCAGTGTTCAATGTCATAGCAGATTCTCCTCGTGATTCTGTCCAGTTTATTGAATGGTCCCCGTCCTCTTGTCCCCGTGCATTACTGATTGCAAATTTCCATGGGAGGGTAACTATTTGGACTCAACCTCCTCAAGGGCCAGCTAATCTTGTCCATGATACTAGCTGTTGGCAGCGTGAGCATGAGTGGCGGCAAGATATTGCAGTTGTTACAAAGTGGCTATCAGGGGTGTCTCCGTATAGGTGGCTTTCATCCAAATCAAGTGCTCCTGCCAATTCAAAGTTGACATTTGAGGAAAAGTATCTTTCGCAGCAATCTCAAACTTCAGCTAGATGGCCCAATTTTCTTTGTGTCTGTTCTGTGTTCTCATCGGGTTCAGTTCAACTTCACTGGTCCCAGTGGCCTCCTACTCAGAATGGCACAACACCGAAGTGGTTTTGCACTAGTAAAGGACTTTTGGGTTGTGGGCCAAGTGGCATTATGGCCGGTGATGCTATCATAACAGACAGTGGTGCCATGCATGTAGCAGGTGTACCAATTGTTAATCCGTCCACCATTGTCGTTTGGGAGGTTGCACCTGGGCCTGGAAATGGTTTCCAGGTAACTCCAAAGACAAGTACCACTTGTGGTGTCCCACCTCTTAGCCCTCCCAACTGGGATGGTTTTGCGGCTTTAGCTGCATATTTATTTAGTTGGCAAGATTATCTATTATCTGAAGCAAAGCAAGGGAGAAAACAGACAGACCAAAACCTTGTTGATGCTGTACCTCTATATTGCTCACCAGTTTCGAATTTTTCAGCATATGTGAGTCCTGAAGCTGCAGCTCAATCTGCAGCAACCACTACATGGGGTTCTGGTGTAACAGCAGTGGCCTTTGATCCAACTCGTGCGGGTTCAGTGATAGCTGTTGTGATAGTTGAGGGACAGTATATGTCCCCTTATGATCCAGATGAGGGCCCATCAATTACAGGGTGGAGAGTGCAACGCTGGGAATCATCTTTACAGCATGTGGTTCTCCATCCTATATTTGGAAACCCTACTTCTAGTATGGGTGGACAACCGCCTATGCAAACTGTTTGGCAGTCCAAAGTAGACCTGAGCATACCTCCAACAAATGATTTCAAGAACCATCAGTCACCTGCAATTGGAATGTCTTCTGATGTGCAAAAGGTATCTGAGTCTGTTTCTGATAAATCAAAAAGGGTCAATTTTGATCCATTTGATCTTCCAAGTGATGTCAGGGCACTTGCTCGAGTTGTTTACTCTGCTCATGGTGGTGAAATTGCCATTGCTTTTCTTCGAGGTGGTGTCCATGTATTTTCAGGTCCAAATTTTACACCTGTAGACAACTATCAGATTAATGTTGGATCTGCAATTGCTGCTCCCGCTTTTTCTTCAACAAGCTGCTGTTCGGCTTCTGTTTGGCATGACTCTAGCAAAAATTGTACAATATTGAGAATAATTCGGGTTCTTCCTCCTTCTATTCCCATTAGTCAAGCAAAGGCCAATTCATCAACTTGGGAGCGTGCCATTGCTGAAAGGTTTTGGTGGAGCCTTTTAGTTAGTGTTGATTGGTGGGATGCTGTGGGCTGCACACAGAGTGCTGCTGAGGATGGTATTGTTTCACTCAATAGTGTTATCGCAGTTTTGGATGCGGATTTCCATTCTCTCCCTTCTGTTCAGCACAGGCAACAGTATGGTCCTAGTCTAGACAGGATAAAGTGTAGGTTACTGGAAGGATCAAATGCCCAAGAGGTGAGGGCGATGGTTCTGGATATGCAAGCTAGGTTGTTATTGGATATGCTTGGGAAAGGAATTGAGTCTGCATTGATAAATTCTTCAGCTTTAGTTCCTGAGCTATGGCAAGCATCAGGTGAAACGTTATCCAGCATTGACCCTGAATCAATGGCTGTTGAACCTGCACTAATTCCCAGTATTCAGGCTTATGTGGATTCAGTTCTTGATTTGGCTTCACATTTTATTACTCGATTGCGCCGTTATGCTAGTTTCTGTCGCACATTGGCAAGTCATGCTGTGACTGCAGGCTCTGGGAGCAACCGCAATATGGTTGCTAGTCCTACCCAAAGTTCAGCAACACCCGCAACAAGTCAAGGAGGTCAAAATGGGACCAGCAGTTCTATGGGAAGCGCCCAGTTGCAAACCTGGGTGCAAGGGGCTATTGCCAAAATTAGCAACACAACTGATGGCGGGTCCAATCCAACTCCTAATCCCATCAGTGGCCCTTCAACATTTATGCCTATTAGCATTAATACAGGAACATTTCCTGGAACACCAGCAGTTAGACTTATTGGGGATTGTCATTTCCTTCACAGACTTTGCCAACTATTGCTCTTCTGCTTTTTCTTTCGACGGACACAACTTCCTCGCTATATTAATAGAACATCTGATACAAATATACAAAAGCCTCAATCTAATACTCCTGCTCCTGGCAAGGTGGAGGAGATTGCAAAACCAGTTTCAGCTGTGGTTAAGTCAGATGATGGTCAGACAGGTCGAACTGGGGCAAAAGGAGCTGAAGAAGTACCCTCTGGACGTTCAAGATTGGGTAGTGGGAATGCTGGCCAGGGATATACGTTTGAAGAGGTCAAGGTGCTTTTTATGATGCTTATGGATCTATGTCGCCGAACAGCTGGGCTGCAACACCCTTTGCCAGTTTCTCAAGTGGGGAGCAACAACATTCAGGTTCGGCTGCATTATATTGATGGGAACTATAGTGTACAGCCAGAGGTTGTGGAAGCATCCCTTGGTCCACATATGCAGAATATGCCCCGTCCCAGAGGTGCAGATGCTGCTGGTCTTCTTTTACGCGAACTAGAACTCCACCCTCCAGCAGAAGAGTGGCACAGGCGGAATATGTTTGGTGCACCTTGGTCTGATCCAGAGGATGTGGATTGTGCTAATGATACACCTAAACTTGTTAATTCTGACCCACTTGATTTTAGCTCATTGGAGCATTGTGATGTTTACTATGGAACTCATCGCTTATGGCCAAGGAAGCGCAGGATGTCTGAAAGAGATGCAGCTTTTGGGTTGAATACTTCTGTGGGCTTGGGAGGTTATCTTGGTATAATGGGTTCTCGAAGAGATGTTGTTACTGCAACGTGGAAAACTGGCCTTGAAGGGGTCTGGTACAAGTGCGTAAGATGTCAGCGGCAGACTTCAGCATTTACTTCACCAGATGCTACTGCTTCTCCTAGTCAGAATGACCGGGAAATGTGGTGGATCAGCCGCTGGGTACATAGCTGCCCAATGTGTGGTGGAACATGGGCTCGGGTTGTATAA

Predicted protein sequences of Glyma.13g181200

Limit To All Plant Sequences

>Glyma.13g181200.1.p sequence-type=predicted peptide transcript=Glyma.13g181200.1 locus=Glyma.13g181200 ID=Glyma.13g181200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNQIGGTKDPEAEPVSPSLPQPQDTPKSSDKTDSATAVVVVAAASEEQEVGEEEKPPPPPVPMEEDPVNPATVFSIRLKQPRSNLLHKMSVPELCRNFSAVSWCGKLNAIACAAETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPSSCPRALLIANFHGRVTIWTQPPQGPANLVHDTSCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSAPANSKLTFEEKYLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPTQNGTTPKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVAPGPGNGFQVTPKTSTTCGVPPLSPPNWDGFAALAAYLFSWQDYLLSEAKQGRKQTDQNLVDAVPLYCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRAGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSIPPTNDFKNHQSPAIGMSSDVQKVSESVSDKSKRVNFDPFDLPSDVRALARVVYSAHGGEIAIAFLRGGVHVFSGPNFTPVDNYQINVGSAIAAPAFSSTSCCSASVWHDSSKNCTILRIIRVLPPSIPISQAKANSSTWERAIAERFWWSLLVSVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSVQHRQQYGPSLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGKGIESALINSSALVPELWQASGETLSSIDPESMAVEPALIPSIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGSGSNRNMVASPTQSSATPATSQGGQNGTSSSMGSAQLQTWVQGAIAKISNTTDGGSNPTPNPISGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYINRTSDTNIQKPQSNTPAPGKVEEIAKPVSAVVKSDDGQTGRTGAKGAEEVPSGRSRLGSGNAGQGYTFEEVKVLFMMLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYSVQPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGAPWSDPEDVDCANDTPKLVNSDPLDFSSLEHCDVYYGTHRLWPRKRRMSERDAAFGLNTSVGLGGYLGIMGSRRDVVTATWKTGLEGVWYKCVRCQRQTSAFTSPDATASPSQNDREMWWISRWVHSCPMCGGTWARVV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain