Glyma.13g180800

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Report for Sequence Feature Glyma.13g180800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	29397979
stop:	29404540
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g180800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17020.3	AT	transcription factor-related	JGI	N/A	IEA
GO:0006281	GO-bp	DNA repair	EnsemblGenomes	N/A	IEA
GO:0006289	GO-bp	nucleotide-excision repair	EnsemblGenomes	N/A	IEA
GO:0006289	GO-bp	nucleotide-excision repair	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006974	GO-bp	cellular response to DNA damage stimulus	EnsemblGenomes	N/A	IEA
GO:0032508	GO-bp	DNA duplex unwinding	EnsemblGenomes	N/A	IEA
GO:0070816	GO-bp	phosphorylation of RNA polymerase II C-terminal domain	EnsemblGenomes	N/A	IEA
GO:0000439	GO-cc	core TFIIH complex	EnsemblGenomes	N/A	IEA
GO:0000439	GO-cc	core TFIIH complex	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0005675	GO-cc	holo TFIIH complex	EnsemblGenomes	N/A	IEA
GO:0003690	GO-mf	double-stranded DNA binding	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
GO:0004003	GO-mf	ATP-dependent DNA helicase activity	EnsemblGenomes	N/A	IEA
GO:0004003	GO-mf	ATP-dependent DNA helicase activity	JGI	N/A	IEA
GO:0008353	GO-mf	RNA polymerase II carboxy-terminal domain kinase activity	EnsemblGenomes	N/A	IEA
KOG3471	KOG	RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2	JGI	N/A	IEA
PTHR13152	Panther	TFIIH, POLYPEPTIDE 4	JGI	N/A	IEA
PF03849	PFAM	Transcription factor Tfb2	JGI	N/A	IEA

Expression Patterns of Glyma.13g180800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g180800 not represented in the dataset	Glyma.13g180800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g180800

Paralog	Evidence	Comments
Glyma.07g195500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g180800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g24920	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g180800

Limit To All Plant Sequences

>Glyma.13g180800.2 sequence-type=transcript locus=Glyma.13g180800 ID=Glyma.13g180800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAATTACTAAAAATTATGTTGATCTCCTCCATGGTGTTCGTCCTCTAATCCTCTGGAACCAGAGCCTGCCAAACGCCTATGACCGCTTCTCTAACTCCCTTAAAGTAGTGActcatctcttctcttctcatctcatctcttgtcttcACCACCCCTCCCCAACTTCACGTGATCCTTTCAAGTCCAAAACGGTGCGTATTATCACCGCCGCGAGAGACCCTTTTCGTACTACAATCACGGAAACGTTCGAGGTTCATGACGGGGTTTCATAAAATCACACGCTTTTTCTTTTAATTCGGTTGTTTAAGCTCTTCCTAAAGACCCCTTTAATCAGAATCCGAATTAAAGATAAAGAAAAAGGTGGTGGTGGTGGTGTCGGAATCACAATGCCAGAGGTTAGAATCATTGCCAAGAATTTCATGGACATGGTGGCTTCCATGCCCGCCATGAAGCTCGATAAGCTCTATGAAAACGGATTCATCTGTGAAGCTATTCTCAGGTCTCTTCTGCCTCTTGCGAAGAAATACGTCATACAGATGCTGCATATTGATGTGTCAGTGGCAGCTAAATTGTTGGAGGAATGGGTGCTTCCGGGTGGAGTTTCAAAGCACAGAGTGGCCATTGATAGGTTGGTTCAATTGAGAGTTTTCCTTGAAGCTGTTGACAGGAAGAATGAAAAGACTTACAAAGTTAATCCAACATTTCAGAGAAGTCTCCAAAAACTTTTAGTACAAGGTGGAACTTTGCCAAGGGAATCAATGCCTTCTAATATTACTGTGAGGCTCCCAACCTTAGAGAATCTTGAGGCTTATGCTCTAGAACAATGGGAGTGTTTCTTATTGCAACTTATAAGCCCAAGTCAGGTTGAAAAGCCCTTGAATATTAGCTCTTCCCTGATGAAGGTTTTCCAGCGGCGTATCCTGAGTTACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATCATCAGAGAATATATATCTAATTCTGAGGATAGAGGTGTTGATGCAGCTGACCTTATCTCATTCATGCTGGAACTTAGTTTTCATGACATTGGGGAGGCATATAGTGTTGACACATTGACTAGTTTTCAGAGGACCATAATTAATGACCTAGCAGACCTTGGTTTGGTAAAAATTCAGCAGGGCAGGAAAGGAAGTTGGTTTATACCTACAAAATTGGCAACCAATCTTTCAATGAGCTTGGCTGATTCATCATCTAGAAAACAGGGATTTGTGGTTGTGGAAACAAATTTTAGAGTTTATGCTTACTCAACTTCTAAATTACATTGTGAGATATTGCGGCTATTCTCAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGGGCTATTACAAAAGAAAGCTTGTATAGTGCTTTTGAAAATGGCATTACAGCAGAGCAGGAATAAGGGGCCTAGTACTAAACTGAATTCTAGAAGGAATAGGAAGCTAGGAGTTAGGGAGCTAGGAGTTAATTATTATAAATAGTGGTGCAGTAGATATTGCAGAGGTATTTTTTGGGGAAACTCATTGTAGAGGAGAGTGCTGAGACACTATTTTCAGTAATCAATAGATAATAGCTGGTTCCTTTTTCTCTCTCTGCGTCTCTGTGTACTGTTGTGTGAATTCTTCTATTTGTGGATACCAGTTGTATCAGCTTTGTCTATTTGCCCCCTGAATGTTGTTTTTACCATTTGAGTTTTGTAAAATAATCCTTTACATAAGTAGCTCTGACACAGGAATATGTTATGCTAGTCCATTTTAGATATCATACGTGGGAGCAGCCTCAACCTCAATCCTTTCTACCCACAGACCTTTCATTTGAATGACCTACATTGATGAATAGATGCATTTCCTTACTGCTATTCACCTCCTCACCCTGACAAGCTTGTACTCACTAAAGCTTTTGGCATTTTTTTACTATCTTTGTAGGTTAGTGTGTTTTTTTTTTTACAGTTATAACACATTCCAATGCACGTTCACTCCATT

>Glyma.13g180800.3 sequence-type=transcript locus=Glyma.13g180800 ID=Glyma.13g180800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAATTACTAAAAATTATGTTGATCTCCTCCATGGTGTTCGTCCTCTAATCCTCTGGAACCAGAGCCTGCCAAACGCCTATGACCGCTTCTCTAACTCCCTTAAAGTAGTGActcatctcttctcttctcatctcatctcttgtcttcACCACCCCTCCCCAACTTCACGTGATCCTTTCAAGTCCAAAACGGTGCGTATTATCACCGCCGCGAGAGACCCTTTTCGTACTACAATCACGGAAACGTTCGAGGTTCATGACGGGGTTTCATAAAATCACACGCTTTTTCTTTTAATTCGGTTGTTTAAGCTCTTCCTAAAGACCCCTTTAATCAGAATCCGAATTAAAGATAAAGAAAAAGGTGGTGGTGGTGGTGTCGGAATCACAATGCCAGAGGTTAGAATCATTGCCAAGAATTTCATGGACATGGTGGCTTCCATGCCCGCCATGAAGCTCGATAAGCTCTATGAAAACGGATTCATCTGTGAAGCTATTCTCAGGTCTCTTCTGCCTCTTGCGAAGAAATACGTCATACAGATGCTGCATATTGATGTGTCAGTGGCAGCTAAATTGTTGGAGGAATGGGTGCTTCCGGGTGGAGTTTCAAAGCACAGAGTGGCCATTGATAGGTTGGTTCAATTGAGAGTTTTCCTTGAAGCTGTTGACAGGAAGAATGAAAAGACTTACAAAGTTAATCCAACATTTCAGAGAAGTCTCCAAAAACTTTTAGTACAAGGTGGAACTTTGCCAAGGGAATCAATGCCTTCTAATATTACTGTGAGGCTCCCAACCTTAGAGAATCTTGAGGCTTATGCTCTAGAACAATGGGAGTGTTTCTTATTGCAACTTATAAGCCCAAGTCAGGTTGAAAAGCCCTTGAATATTAGCTCTTCCCTGATGAAGGTTTTCCAGCGGCGTATCCTGAGTTACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATCATCAGAGAATATATATCTAATTCTGAGGATAGAGGTGTTGATGCAGCTGACCTTATCTCATTCATGCTGGAACTTAGTTTTCATGACATTGGGGAGGCATATAGTGTTGACACATTGACTAGTTTTCAGAGGACCATAATTAATGACCTAGCAGACCTTGGTTTGGTAAAAATTCAGCAGGGCAGGAAAGGAAGTTGGTTTATACCTACAAAATTGGCAACCAATCTTTCAATGAGCTTGGCTGATTCATCATCTAGAAAACAGGGATTTGTGGTTGTGGAAACAAATTTTAGAGTTTATGCTTACTCAACTTCTAAATTACATTGTGAGATATTGCGGCTATTCTCAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGGGCTATTACAAAAGAAAGCTTGTATAGTGCTTTTGAAAATGGCATTACAGCAGAGCAGGTAAGTATTAGAAAATAAAAATTTTAGTGTGCAATATCTGCTTTTATAATATGATACTTGG

Coding sequences of Glyma.13g180800

Limit To All Plant Sequences

>Glyma.13g180800.1 sequence-type=CDS polypeptide=Glyma.13g180800.1.p locus=Glyma.13g180800 ID=Glyma.13g180800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGAGGTTAGAATCATTGCCAAGAATTTCATGGACATGGTGGCTTCCATGCCCGCCATGAAGCTCGATAAGCTCTATGAAAACGGATTCATCTGTGAAGCTATTCTCAGGTCTCTTCTGCCTCTTGCGAAGAAATACGTCATACAGATGCTGCATATTGATGTGTCAGTGGCAGCTAAATTGTTGGAGGAATGGGTGCTTCCGGGTGGAGTTTCAAAGCACAGAGTGGCCATTGATAGGTTGGTTCAATTGAGAGTTTTCCTTGAAGCTGTTGACAGGAAGAATGAAAAGACTTACAAAGTTAATCCAACATTTCAGAGAAGTCTCCAAAAACTTTTAGTACAAGGTGGAACTTTGCCAAGGGAATCAATGCCTTCTAATATTACTGTGAGGCTCCCAACCTTAGAGAATCTTGAGGCTTATGCTCTAGAACAATGGGAGTGTTTCTTATTGCAACTTATAAGCCCAAGTCAGGTTGAAAAGCCCTTGAATATTAGCTCTTCCCTGATGAAGGTTTTCCAGCGGCGTATCCTGAGTTACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATCATCAGAGAATATATATCTAATTCTGAGGATAGAGGTGTTGATGCAGCTGACCTTATCTCATTCATGCTGGAACTTAGTTTTCATGACATTGGGGAGGCATATAGTGTTGACACATTGACTAGTTTTCAGAGGACCATAATTAATGACCTAGCAGACCTTGGTTTGGTAAAAATTCAGCAGGGCAGGAAAGGAAGTTGGTTTATACCTACAAAATTGGCAACCAATCTTTCAATGAGCTTGGCTGATTCATCATCTAGAAAACAGGGATTTGTGGTTGTGGAAACAAATTTTAGAGTTTATGCTTACTCAACTTCTAAATTACATTGTGAGATATTGCGGCTATTCTCAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGGGCTATTACAAAAGAAAGCTTGTATAGTGCTTTTGAAAATGGCATTACAGCAGAGCAGATAATCACTTTCCTTCAGCAAAATGCTCATCCTCGTGTTGCGGAGAGGATACCATCTGTGCCTGAAAATGTCACAGAACAGATTAGGCTGTGGGAAGCAGATCTAAACAGAGTTGAGATGACAGATGCATACTATTACGATGAGTTCCCTTCCAGAGATGTGTTTGAAGGAGCCTGTGACTGTGCTAGAGAATGGAATGGTTTGTTGTGGGAAGATTCAAAGAAGATGCACATGGTGGTTAAGACTGAGGTACATCAGTATGTACGAGATTATTTGCGCCGTCAAAAGTAG

>Glyma.13g180800.2 sequence-type=CDS polypeptide=Glyma.13g180800.2.p locus=Glyma.13g180800 ID=Glyma.13g180800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGAGGTTAGAATCATTGCCAAGAATTTCATGGACATGGTGGCTTCCATGCCCGCCATGAAGCTCGATAAGCTCTATGAAAACGGATTCATCTGTGAAGCTATTCTCAGGTCTCTTCTGCCTCTTGCGAAGAAATACGTCATACAGATGCTGCATATTGATGTGTCAGTGGCAGCTAAATTGTTGGAGGAATGGGTGCTTCCGGGTGGAGTTTCAAAGCACAGAGTGGCCATTGATAGGTTGGTTCAATTGAGAGTTTTCCTTGAAGCTGTTGACAGGAAGAATGAAAAGACTTACAAAGTTAATCCAACATTTCAGAGAAGTCTCCAAAAACTTTTAGTACAAGGTGGAACTTTGCCAAGGGAATCAATGCCTTCTAATATTACTGTGAGGCTCCCAACCTTAGAGAATCTTGAGGCTTATGCTCTAGAACAATGGGAGTGTTTCTTATTGCAACTTATAAGCCCAAGTCAGGTTGAAAAGCCCTTGAATATTAGCTCTTCCCTGATGAAGGTTTTCCAGCGGCGTATCCTGAGTTACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATCATCAGAGAATATATATCTAATTCTGAGGATAGAGGTGTTGATGCAGCTGACCTTATCTCATTCATGCTGGAACTTAGTTTTCATGACATTGGGGAGGCATATAGTGTTGACACATTGACTAGTTTTCAGAGGACCATAATTAATGACCTAGCAGACCTTGGTTTGGTAAAAATTCAGCAGGGCAGGAAAGGAAGTTGGTTTATACCTACAAAATTGGCAACCAATCTTTCAATGAGCTTGGCTGATTCATCATCTAGAAAACAGGGATTTGTGGTTGTGGAAACAAATTTTAGAGTTTATGCTTACTCAACTTCTAAATTACATTGTGAGATATTGCGGCTATTCTCAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGGGCTATTACAAAAGAAAGCTTGTATAGTGCTTTTGAAAATGGCATTACAGCAGAGCAGGAATAA

>Glyma.13g180800.3 sequence-type=CDS polypeptide=Glyma.13g180800.3.p locus=Glyma.13g180800 ID=Glyma.13g180800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGAGGTTAGAATCATTGCCAAGAATTTCATGGACATGGTGGCTTCCATGCCCGCCATGAAGCTCGATAAGCTCTATGAAAACGGATTCATCTGTGAAGCTATTCTCAGGTCTCTTCTGCCTCTTGCGAAGAAATACGTCATACAGATGCTGCATATTGATGTGTCAGTGGCAGCTAAATTGTTGGAGGAATGGGTGCTTCCGGGTGGAGTTTCAAAGCACAGAGTGGCCATTGATAGGTTGGTTCAATTGAGAGTTTTCCTTGAAGCTGTTGACAGGAAGAATGAAAAGACTTACAAAGTTAATCCAACATTTCAGAGAAGTCTCCAAAAACTTTTAGTACAAGGTGGAACTTTGCCAAGGGAATCAATGCCTTCTAATATTACTGTGAGGCTCCCAACCTTAGAGAATCTTGAGGCTTATGCTCTAGAACAATGGGAGTGTTTCTTATTGCAACTTATAAGCCCAAGTCAGGTTGAAAAGCCCTTGAATATTAGCTCTTCCCTGATGAAGGTTTTCCAGCGGCGTATCCTGAGTTACAGAGACAAAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAGCTTTGGTACATCATCAGAGAATATATATCTAATTCTGAGGATAGAGGTGTTGATGCAGCTGACCTTATCTCATTCATGCTGGAACTTAGTTTTCATGACATTGGGGAGGCATATAGTGTTGACACATTGACTAGTTTTCAGAGGACCATAATTAATGACCTAGCAGACCTTGGTTTGGTAAAAATTCAGCAGGGCAGGAAAGGAAGTTGGTTTATACCTACAAAATTGGCAACCAATCTTTCAATGAGCTTGGCTGATTCATCATCTAGAAAACAGGGATTTGTGGTTGTGGAAACAAATTTTAGAGTTTATGCTTACTCAACTTCTAAATTACATTGTGAGATATTGCGGCTATTCTCAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGGGCTATTACAAAAGAAAGCTTGTATAGTGCTTTTGAAAATGGCATTACAGCAGAGCAGGTAAGTATTAGAAAATAA

Predicted protein sequences of Glyma.13g180800

Limit To All Plant Sequences

>Glyma.13g180800.1.p sequence-type=predicted peptide transcript=Glyma.13g180800.1 locus=Glyma.13g180800 ID=Glyma.13g180800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPEVRIIAKNFMDMVASMPAMKLDKLYENGFICEAILRSLLPLAKKYVIQMLHIDVSVAAKLLEEWVLPGGVSKHRVAIDRLVQLRVFLEAVDRKNEKTYKVNPTFQRSLQKLLVQGGTLPRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILSYRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHDIGEAYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITAEQIITFLQQNAHPRVAERIPSVPENVTEQIRLWEADLNRVEMTDAYYYDEFPSRDVFEGACDCAREWNGLLWEDSKKMHMVVKTEVHQYVRDYLRRQK*

>Glyma.13g180800.2.p sequence-type=predicted peptide transcript=Glyma.13g180800.2 locus=Glyma.13g180800 ID=Glyma.13g180800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPEVRIIAKNFMDMVASMPAMKLDKLYENGFICEAILRSLLPLAKKYVIQMLHIDVSVAAKLLEEWVLPGGVSKHRVAIDRLVQLRVFLEAVDRKNEKTYKVNPTFQRSLQKLLVQGGTLPRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILSYRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHDIGEAYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITAEQE*

>Glyma.13g180800.3.p sequence-type=predicted peptide transcript=Glyma.13g180800.3 locus=Glyma.13g180800 ID=Glyma.13g180800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPEVRIIAKNFMDMVASMPAMKLDKLYENGFICEAILRSLLPLAKKYVIQMLHIDVSVAAKLLEEWVLPGGVSKHRVAIDRLVQLRVFLEAVDRKNEKTYKVNPTFQRSLQKLLVQGGTLPRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILSYRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHDIGEAYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITAEQVSIRK*

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