Glyma.13g175300

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Report for Sequence Feature Glyma.13g175300

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28997302
stop:	28999400
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g175300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28400.1	AT		JGI	N/A	IEA

Proteins Associated with Glyma.13g175300

Locus	Gene Symbol	Protein Name
	RAD51a	Radiation- repair 51 gene a

Expression Patterns of Glyma.13g175300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g175300

Paralog	Evidence	Comments
Glyma.07g201100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g175300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g24380	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.13g175300

Limit To All Plant Sequences

>Glyma.13g175300.1 sequence-type=CDS polypeptide=Glyma.13g175300.1.p locus=Glyma.13g175300 ID=Glyma.13g175300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCCAATCTCAAAACTCATTCCTTTCCTATTCTTAACAACCCTTTTAGTTTCCCTCCAAGTTAATGCCAGAGACAGCCAATTCTTCAGCAAAGTCACCCCTCTCAACAACAACATCAAAGAGACTGAGACTCCCAAAAATGAAGGCCAAGTAAACAAGCCAGAACAACAACCAACATTCATTCCTGAAACTGAAAACAGTTATGGCCTATATGGTCATGAGACTGGTCTGCACCCTCCCACCACTACAACAACTAATGCTGCACCCTACACCACCACTTACAAGCCATACAAAACTACCACAGCTGAAGAGGACACTGCCAAGTACTCCAACAACAACAACTTCTACAGCTTCAAGAAGGATGGCTACAACACCAACCAAAATGAGTTGAGTGAAACAACAAGACTCACAGGCACTTCTTACACCAACAACAACAACTACTTCTACAGCGGTAAGGATGCTTTTGCTAAGCAGAATGAATTGAGTGATACAAAGTACACTGAAGGTGGATACAACACGGAAAATCAGAACAGCAACAACAACTACTTCTACAACGGCAAGGATGCTTTTGGTAAGCAGAACGAATTGAGTGACACAAAGTACACTGAAGAAGGATACAACTCCATGGAGAATCAGAACAACAACAACAACTACTACAACGGCAAGGATGCTTTTGGTAAGCAAAATGAATTGAGTGACACAAAGTACACTGAAGAAGGATACAACTCCATGGAGAATCAGAACAACAACAACAACAACAATAAATATTACTACAACAACGACCAAGCCGCCAATGAGAAATACTTCTACAACAACAACAACAATGATGATGCTGCCAACAACAGGTATTACAAAACCAAATCTGTCAACAGCAATTACAACGGCGAGAGGCAGGGTTTGAGTGACACGAGGTTTATAGAGGGTGGAAAATACTTCTATGATGTTAAGTCTGAAAAGTACAACCATCCAACACAATATGGTGGCTCAACCAGAGGAGTTAACTCAGAAAATTGGTCCAGCAACAGAGGTTACTTTGGCAACAACAATGTGAACTCCATGGAAGGTTACCAGAACCAGGAGGAGTTTGAAGATGACCAAGAGGACTTCGACCCTTGA

Predicted protein sequences of Glyma.13g175300

Limit To All Plant Sequences

>Glyma.13g175300.1.p sequence-type=predicted peptide transcript=Glyma.13g175300.1 locus=Glyma.13g175300 ID=Glyma.13g175300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPISKLIPFLFLTTLLVSLQVNARDSQFFSKVTPLNNNIKETETPKNEGQVNKPEQQPTFIPETENSYGLYGHETGLHPPTTTTTNAAPYTTTYKPYKTTTAEEDTAKYSNNNNFYSFKKDGYNTNQNELSETTRLTGTSYTNNNNYFYSGKDAFAKQNELSDTKYTEGGYNTENQNSNNNYFYNGKDAFGKQNELSDTKYTEEGYNSMENQNNNNNYYNGKDAFGKQNELSDTKYTEEGYNSMENQNNNNNNNKYYYNNDQAANEKYFYNNNNNDDAANNRYYKTKSVNSNYNGERQGLSDTRFIEGGKYFYDVKSEKYNHPTQYGGSTRGVNSENWSSNRGYFGNNNVNSMEGYQNQEEFEDDQEDFDP*

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