SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G37990.1 | AT | ribosome biogenesis regulatory protein (RRS1) family protein | JGI | N/A | IEA |
| GO:0000055 | GO-bp | ribosomal large subunit export from nucleus | EnsemblGenomes | N/A | IEA |
| GO:0000447 | GO-bp | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | EnsemblGenomes | N/A | IEA |
| GO:0042254 | GO-bp | ribosome biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0042254 | GO-bp | ribosome biogenesis | JGI | N/A | IEA |
| GO:0042273 | GO-bp | ribosomal large subunit biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | JGI | N/A | IEA |
| GO:0005730 | GO-cc | nucleolus | EnsemblGenomes | N/A | IEA |
| GO:0030687 | GO-cc | preribosome, large subunit precursor | EnsemblGenomes | N/A | IEA |
| KOG1765 | KOG | Regulator of ribosome synthesis | JGI | N/A | IEA |
| PTHR17602 | Panther | RIBOSOME BIOGENESIS REGULATORY PROTEIN | JGI | N/A | IEA |
| PF04939 | PFAM | Ribosome biogenesis regulatory protein (RRS1) | JGI | N/A | IEA |
|
Glyma.13g167900 not represented in the dataset |
Glyma.13g167900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g115500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g23700 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g167900.1 sequence-type=CDS polypeptide=Glyma.13g167900.1.p locus=Glyma.13g167900 ID=Glyma.13g167900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGATGGAGGGTGAGAAACAGCACAAGTTTGATGTGGACCTCGGCAACCTCATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGCTATCGCAGATGCCCTCTTTATCTTACCATCGACCGAAGATTTGGATGGACCCCTTGTCACCTTGCCTCCCCCACTCACTAAATTGCCTAGAGAAAAACATCTGCCAAAACCAAAGCCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAGGCATACAGAAACGGAAGAAAGACAAAATTGTATATGACGAGCAGTCTGGAACCTGGAAACGCAGACATGGGTATGATCGTGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATGATCCAGAAGAGGATCCTTTTGCCAAAAGGAAAGAAAATAAGAAGAATAGAATTGAAAAACAGGAGAAAAATCGATTACAGAACTTGAAAGAAGCTGCAAAATTTGGTGCTTTACCAAGCCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGCGCCCAAGAAAGTTACAAAGGATGAACTAGGTAATGTAGCAGGAATTGCAGCAACTGCAACAGCCAGTGGGGGAAAGTTTGACAAGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGTTCCTGCCAGTGGTGGAAGGAACCGGGATAGGATCCCTGGAGAGGGAGCAAACTGAAAAAATATTGAACAAGATCATCTCCAAGAATTCTCATAACATACTCAACGTTGAAAAGGCTGTCACGATGCACAATGTGAAGAAAGAGAAGAAACGAAGGAGCGAGAAAGGAAAGGCTTCAGCAACTACTGACAAGAAATTGAAAACTCAGAAAAAGTCTTTTAAAAAGGGAAGCTCCAAGAAAGGCAAGGCGAAAGGAAAATAG
>Glyma.13g167900.1.p sequence-type=predicted peptide transcript=Glyma.13g167900.1 locus=Glyma.13g167900 ID=Glyma.13g167900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEMEGEKQHKFDVDLGNLMAFDSYHTFPSQPSLSREDLIKQCLLKGTHLVQAIADALFILPSTEDLDGPLVTLPPPLTKLPREKHLPKPKPPTKWEAFAKKKGIQKRKKDKIVYDEQSGTWKRRHGYDRANDEEAIPIIEAKPTDDPEEDPFAKRKENKKNRIEKQEKNRLQNLKEAAKFGALPSHVQLAATALPITGTQAAPKKVTKDELGNVAGIAATATASGGKFDKKLAGEKPQKHEGKYRKFLPVVEGTGIGSLEREQTEKILNKIISKNSHNILNVEKAVTMHNVKKEKKRRSEKGKASATTDKKLKTQKKSFKKGSSKKGKAKGK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
