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Report for Sequence Feature Glyma.13g167800

Feature Type:gene_model
Chromosome:Gm13
Start:28237470
stop:28239072
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g167800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20160.1AT Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0000470GO-bp maturation of LSU-rRNA EnsemblGenomesN/AIEA
GO:0030490GO-bp maturation of SSU-rRNA EnsemblGenomesN/AIEA
GO:0042254GO-bp ribosome biogenesis EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0031428GO-cc box C/D snoRNP complex EnsemblGenomesN/AIEA
GO:0032040GO-cc small-subunit processome EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
GO:0071011GO-cc precatalytic spliceosome EnsemblGenomesN/AIEA
GO:1990904GO-cc ribonucleoprotein complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG3387 KOG 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing JGI N/AIEA
PTHR23105Panther RIBOSOMAL PROTEIN L7AE FAMILY MEMBER JGI N/AIEA
PTHR23105:SF11Panther JGI N/AIEA
PF01248PFAM Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JGI N/AIEA

Expression Patterns of Glyma.13g167800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g167800
ParalogEvidenceComments
Glyma.17g115400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g167800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g23690 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g167800
>Glyma.13g167800.1 sequence-type=CDS polypeptide=Glyma.13g167800.1.p locus=Glyma.13g167800 ID=Glyma.13g167800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCCTCGTAACGGCTCAGTTGTGTATTCTCGTTCTGCACGAAGGAAAAACCCTAGCTTCCGTTCGATCAACAATGACAGGAGAGACAGTGAACCCCAAAGCTTACCCTTTGGCCGATGCCCAACTCTCAATAACCATACTAGATCTTGTTCAACAAGCTGCCAACTACAAGCAGCTCAAAAAAGGTGCTAATGAAGCCACTAAAACCCTGAACAGAGGTATCTCTGAATTTGTTGTCATGGCTGCTGATACTGAACCCCTTGAAATTCTTCTCCATCTTCCTCTACTCGCCGAGGATAAGAATGTGCCCTACGTGTTTGTCCCTTCAAAACAAGCACTTGGGCGTGCATGTGGGGTCACCAGGCCAGTGATTGCTTGTTCTGTGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATCCAGCAACTAAAGGATGCTATTGAGAAGCTTTTGATCTGA
Predicted protein sequences of Glyma.13g167800
>Glyma.13g167800.1.p sequence-type=predicted peptide transcript=Glyma.13g167800.1 locus=Glyma.13g167800 ID=Glyma.13g167800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFLVTAQLCILVLHEGKTLASVRSTMTGETVNPKAYPLADAQLSITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI*






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