SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g167600

Feature Type:gene_model
Chromosome:Gm13
Start:28210440
stop:28212300
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g167600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25520.1AT Drug/metabolite transporter superfamily protein JGI N/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
KOG1441 KOG Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter JGI N/AIEA
PTHR11132Panther SOLUTE CARRIER FAMILY 35 JGI N/AIEA
PF03151PFAM Triose-phosphate Transporter family JGI N/AIEA

Expression Patterns of Glyma.13g167600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g167600
ParalogEvidenceComments
Glyma.17g115200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g167600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g23670 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g167600
>Glyma.13g167600.1 sequence-type=CDS polypeptide=Glyma.13g167600.1.p locus=Glyma.13g167600 ID=Glyma.13g167600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTCTCCGACGGCGTCGTGAAGAAAATCGTCCTCTCCTACACTTACGTGGCGATATGGATCTTCCTCAGCTTCACGGTCATCGTGTACAACAAGTACATTCTGGATCGCAAGATGTACAACTGGCCCTACCCGATCTCGCTCACCATGATCCACATGGCGTTCTGTTCCTCCCTGGCGTACATTCTCGTTCGCGTCTTGAAGCTCGTGGAACCGGTTTCGATGTCTCGGGATCTCTACCTCAAATCCGTTGTTCCAATCGGTGCACTCTATTCACTTTCCCTCTGGTTTTCCAATTCCGCGTATATATACCTCTCTGTTTCGTTCATTCAGATGCTCAAGGCTCTTATGCCTGTTGCGGTTTATTCAATTGGTGTCATGTTCAAAAAAGAGGCCTTTAAGAACGAGACCATGGCGAACATGGTTTCCATCTCGCTCGGTGTTGCGGTTGCGGCTTACGGTGAAGCCAAATTCGATGCATGGGGTGTTACCCTGCAGCTTATGGCGGTTGCGTTTGAGGCGACACGGTTGGTTCTGATTCAGATTTTGCTCAATTCGAAGGGGATTTCGCTGAACCCTATCACCTCGCTTTACTACATTGCTCCCTGTTGTTTGGTGTTCTTGTCCGTGCCTTGGATTATCATGGAGTACCCTTCGTTGAGGGACAACTCCAGCTTCCATTTGGATTTCGCGATTTTCGGCACCAATTCGGCTTGTGCTTTCGCGTTGAACCTCGCGGTTTTCTTGCTGGTGGGAAAGACTTCGGCTTTGACAATGAACGTTGCTGGGGTGGTCAAGGATTGGCTCTTGATTGCGTTCTCTTGGTCTGTGATAAAGGATACTGTGACCCCACTTAACTTGATTGGTTACGGCTTGGCATTTTTGGGGGTTGCGTATTATAATCATTGCAAGTTGCAGGCTTTGAAGGCTTCGGAGGCGCAGAAGAAGACTCAGCAGGCTGATGAAGAGGCTGGGAGGTTGTTGGAGCAGAAGGATGAAGGGACTGGAAGGAAGAACGACAACCAGAACTGA
Predicted protein sequences of Glyma.13g167600
>Glyma.13g167600.1.p sequence-type=predicted peptide transcript=Glyma.13g167600.1 locus=Glyma.13g167600 ID=Glyma.13g167600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSDGVVKKIVLSYTYVAIWIFLSFTVIVYNKYILDRKMYNWPYPISLTMIHMAFCSSLAYILVRVLKLVEPVSMSRDLYLKSVVPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSIGVMFKKEAFKNETMANMVSISLGVAVAAYGEAKFDAWGVTLQLMAVAFEATRLVLIQILLNSKGISLNPITSLYYIAPCCLVFLSVPWIIMEYPSLRDNSSFHLDFAIFGTNSACAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPLNLIGYGLAFLGVAYYNHCKLQALKASEAQKKTQQADEEAGRLLEQKDEGTGRKNDNQN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo