Glyma.13g166800

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Report for Sequence Feature Glyma.13g166800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28161946
stop:	28164623
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g166800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26660.1	AT	SPX domain gene 2	JGI	N/A	IEA
GO:0016036	GO-bp	cellular response to phosphate starvation	EnsemblGenomes	N/A	IEA
GO:0005783	GO-cc	endoplasmic reticulum	EnsemblGenomes	N/A	IEA
KOG1161	KOG	Protein involved in vacuolar polyphosphate accumulation, contains SPX domain	JGI	N/A	IEA
PTHR10783	Panther	XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED	JGI	N/A	IEA
PTHR10783:SF5	Panther		JGI	N/A	IEA
PF03105	PFAM	SPX domain	JGI	N/A	IEA

Proteins Associated with Glyma.13g166800

Locus	Gene Symbol	Protein Name
	SPX7	SPX domain-containing 7

Expression Patterns of Glyma.13g166800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g166800

Paralog	Evidence	Comments
Glyma.17g114700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g166800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g23580	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.13g166800

Limit To All Plant Sequences

>Glyma.13g166800.1 sequence-type=CDS polypeptide=Glyma.13g166800.1.p locus=Glyma.13g166800 ID=Glyma.13g166800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATTCGGAAAGAGCCTGAGCAGCCAGATCGAGAAAACCCTGCCGGAGTGGCGTGACAAGTTCCTCTCCTACAAGGAGCTCAAGAAGAAGCTCAAGCAATTCGACCCTCCCGCCGCCGCCGATGAGCGCCCCGGCAAACGCCTCAAGTCCGACGCCGTTCCCGACGCCGCCGACATGTCGAAGGAGGAGAGCGACTTCCGGAACCTGCTGGAGAATGAACTCGACAAATTCAACACCTTCTTCGTCGAGAAGGAGGAAGAGTACATTATCAGACTCAAGGAGTTACAAGATAGGGTTGCCAAAGTTAAGGATTCAAGTGAAGAGATGATGAAAATCCACAAGGAAATTGTGGACTTCCATGGAGAGATGGTCTTGCTGGAAAACTACAGTGCCCTTAACTATACAGGGCTAGTGAAAATACTTAAAAAGTATGACAAGAGAACTGGTGCTCTCATTCGCTTGCCCTTCATTCAGAAGGTCTTGCAACAACCTTTCTTTATCACTGACTTGCTCTACAAGCTTGTAAAAGAGTGTGAAACAATGCTGGACCGCCTTTTCCCTGTGAATGATCCTGCTCCAGTTTCCAGTGAGACAACTCCCCAAGCTGAAGGTTTTGATCCTTCAACTTCAACCACTACCAAGAGTGATGGTTTGCTGATTCCCAAGGAATTAGCTGAGATTGAGTACATGGAGAGCCTTTATATGAAGAGTACTGTATCAGCTTTGCATGTTTTGCAGGAAATTAGAAGTGGAAGCTCAACAGTTAGCATGTTTTCATTGCCACCGTTGAAAATAAGTGGTTCAGAAGAAACATGGAAGAAAATCCCGGTTCTGGAACAAACAGCCAAGTAA

Predicted protein sequences of Glyma.13g166800

Limit To All Plant Sequences

>Glyma.13g166800.1.p sequence-type=predicted peptide transcript=Glyma.13g166800.1 locus=Glyma.13g166800 ID=Glyma.13g166800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFGKSLSSQIEKTLPEWRDKFLSYKELKKKLKQFDPPAAADERPGKRLKSDAVPDAADMSKEESDFRNLLENELDKFNTFFVEKEEEYIIRLKELQDRVAKVKDSSEEMMKIHKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFITDLLYKLVKECETMLDRLFPVNDPAPVSSETTPQAEGFDPSTSTTTKSDGLLIPKELAEIEYMESLYMKSTVSALHVLQEIRSGSSTVSMFSLPPLKISGSEETWKKIPVLEQTAK*

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