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Report for Sequence Feature Glyma.13g162300

Feature Type:gene_model
Chromosome:Gm13
Start:27773991
stop:27778719
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g162300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10790.1AT ubiquitin-specific protease 22 JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process JGI N/AIEA
GO:0016579GO-bp protein deubiquitination EnsemblGenomesN/AIEA
GO:0004221GO-mf ubiquitin thiolesterase activity JGI N/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0008234GO-mf cysteine-type peptidase activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0036459GO-mf thiol-dependent ubiquitinyl hydrolase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1867 KOG Ubiquitin-specific protease JGI N/AIEA
PTHR24006Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24006:SF57Panther JGI N/AIEA
PF00443PFAM Ubiquitin carboxyl-terminal hydrolase JGI N/AIEA
PF02148PFAM Zn-finger in ubiquitin-hydrolases and other protein JGI N/AIEA

Expression Patterns of Glyma.13g162300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g162300
ParalogEvidenceComments
Glyma.17g109100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g162300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g23120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g162300
>Glyma.13g162300.1 sequence-type=CDS polypeptide=Glyma.13g162300.1.p locus=Glyma.13g162300 ID=Glyma.13g162300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCTCCAAGATCAACGGTCAGATTTCTCCCCTGCCCTGTCCCCACTTGGCCGAGTTCCACCGCACCTCCGCCAAGCCATTCCTAGCCCTCCACAACTGCCTCCGGATCAAGCCTCCCGGCGGCCGCGCCTCCCTCCGCCGCAATCCCGACGAGGTTCCTCGCTGCTGCGCCTGCGGCCTCTCCGCACCTTCCCGCCTCTACGCATGCGTCACCTGCGCCGCCGTATCCTGCCACTCCTCCGCCGCCGGAGTCCTCTCCCACGCCGCCGCTCACGCCGCCTCAATGCCGCCCGGCCACCAGATCGCCGTCGACGTCGACCGTGCCGAGCTCTTCTGCTGCGCGTGCCGCGACCAGGTCTACGATCGCGACTTCGACGCCGCCGTCGTGATCGCTCAGACTGCTGCGTCAACTCTCGGCGGCGATCCTCCGCCGCCGATCCCGTCGCCGCAACCAGAGAATCTTCGAAAGAAGCGCCGTGTGGATTACTGGCCTTGGGCGCCGGATCTGCGCGAACGCGCTCTGATCGGAAGCTTCTCTGGCCCGATTGCCGGGGCTGAAACCGTAGTCGATCATTCGCCGGGTTTGCCGCGCGGATTACGCGGATTGAACAATTTGGGAAACACGTGCTTCATGAACTCGGTGTTGCAAGCGCTGCTTCACACGCCGCCGTTGCGGAATTACTTCTTGAGCGATAGGCACAATCGGTTTTTCTGCCAGAAGAAAAACAACGGTGACGTTGACGTTGACGCTGCTGTGAAGAGAAGTGGCGGCAACAATGGGAACAAGAATGCGCGAATATGCTTAGCTTGCGATATGGATGCTACGTTCTCTGCTGTGTTTTCTGGTGATCGTGCTCCTTATAGCCCCGCTAAGTTTTTATACAGTTGGTGGCAGCACGCAGCAAACCTTGCCACTTATGAACAACAGGATGCGCATGAGTTTTTCATTTCCATGCTTGATGGAATCCATGAGAAGGTGGAGAAGGGTAGGCGTAAGCCACATACTGAAGGCAATGGTGACTGTTGTATTGCTCATAAAGTATTCTCTGGTATTTTGCGATCAGATGTTACATGTATGGCCTGTGGTTTCACATCAACTACTTATGACCCATGCATAGACATCTCACTGGACTTAGAACCAAATCAATGGGGTTCCACCAAAATGGCTACTGCAACGTCCAATCATTCTTGCAATGGTGAGGCTGATTGTATGAATTCGAGCCAAATCTGTGGAACATCTACCCTGATGGGATGCTTGAAGAGATTTACAAGAGCAGAAAGATTGGGGTCAGACCAAAAAATTTTCTGTCGGCAGTGTCAGGTGAGGCAAGAAACTCTCAAACAGATGTCCATAAGGAAGCTTCCCCTTGTTTCTTGCTTCCATATAAAAAGATTTGAGCATTCTTCAACAAGAAAGATGCCAAGGAAAGTGGATCGCTACCTGCAGTTCCCATTTTCACTGGACATGTCACCTTATCTCTCATCAACAATTTTAAGGAATCGATTTGGGAACAGGATCTTTCCTTTTGATGGGGATGAGCTGGATGCTTCAGATGAATTGTGTTCAGAGTTTGAGTTGTTTGCCGTTGTCACGCACAGTGGTAAGCTAGACGCTGGCCATTATGTCACTTATCTGCGATTAAGTAATCGGTGGTACAAGTGTGATGATGCCTGGGTTACTCAAGTTGATGAGAATATTGTGAGGGCTGCACAGTGTTACATGATGTTCTATGTACAGAAGATGCTTTACTATAAAGCAACTGATAAACATGTCGCTTCATGA
Predicted protein sequences of Glyma.13g162300
>Glyma.13g162300.1.p sequence-type=predicted peptide transcript=Glyma.13g162300.1 locus=Glyma.13g162300 ID=Glyma.13g162300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSKINGQISPLPCPHLAEFHRTSAKPFLALHNCLRIKPPGGRASLRRNPDEVPRCCACGLSAPSRLYACVTCAAVSCHSSAAGVLSHAAAHAASMPPGHQIAVDVDRAELFCCACRDQVYDRDFDAAVVIAQTAASTLGGDPPPPIPSPQPENLRKKRRVDYWPWAPDLRERALIGSFSGPIAGAETVVDHSPGLPRGLRGLNNLGNTCFMNSVLQALLHTPPLRNYFLSDRHNRFFCQKKNNGDVDVDAAVKRSGGNNGNKNARICLACDMDATFSAVFSGDRAPYSPAKFLYSWWQHAANLATYEQQDAHEFFISMLDGIHEKVEKGRRKPHTEGNGDCCIAHKVFSGILRSDVTCMACGFTSTTYDPCIDISLDLEPNQWGSTKMATATSNHSCNGEADCMNSSQICGTSTLMGCLKRFTRAERLGSDQKIFCRQCQVRQETLKQMSIRKLPLVSCFHIKRFEHSSTRKMPRKVDRYLQFPFSLDMSPYLSSTILRNRFGNRIFPFDGDELDASDELCSEFELFAVVTHSGKLDAGHYVTYLRLSNRWYKCDDAWVTQVDENIVRAAQCYMMFYVQKMLYYKATDKHVAS*






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