Glyma.13g159900

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Report for Sequence Feature Glyma.13g159900

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27560735
stop:	27566769
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g159900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53270.1	AT	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	JGI	N/A	IEA
GO:0042795	GO-bp	snRNA transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0042796	GO-bp	snRNA transcription by RNA polymerase III	EnsemblGenomes	N/A	IEA
GO:0019185	GO-cc	snRNA-activating protein complex	EnsemblGenomes	N/A	IEA
GO:0043565	GO-mf	sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
PTHR15131	Panther	SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1	JGI	N/A	IEA
PF09808	PFAM	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	JGI	N/A	IEA

Expression Patterns of Glyma.13g159900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g159900 not represented in the dataset	Glyma.13g159900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g159900

Paralog	Evidence	Comments
Glyma.17g111600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g159900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g22870	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g159900

Limit To All Plant Sequences

>Glyma.13g159900.2 sequence-type=transcript locus=Glyma.13g159900 ID=Glyma.13g159900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACCTTCTTGCCTCACGAACTCAGACTCGCCTCTTGCCCTCACCGGCGCGGCCACCAAACGGTGCAACGCCACCAGCGTTTATTCACAGATCACACGGCGGCGACGACCTCCCTTACCAGCGCTTTGTCTCGAAAACGCGCATCTTTGACTCACTTCCTCACAGGCACGGATCGCGCTGCGCCCTCCCTCACCGACGTCAACGTGACCGGCTTCTGGTGGCACATAGCGCACTGCACTCGCACAAAGCCAACACTTCCTTTGAACTCACGCGTTCCTGGAGACCCAAAAGTTCGAAACTGAACATTTTCACAAGCTTTCGGAGGGCGTTGATGAGTTCGGTAGCTATTTTGCTTTCAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAACCAAGATTGAAGATGGACATCTGGGTCGTCGTGGTTACTTTTGCATGGGGAATTCATAATTAATATCCCTGTTTAGATAGTAGGAGGAAATGTGTTCCTTTTCCAGTTATTGCTGCTTTAAACAAGACAATGAAACAAAAAAAAAATGATAAAATGTATTATGCTTCATTTTATTCAACATTTCTATTTTTCTTCTATGTTTATGACCACATATTTCCTTTTCATCCGCACACTTTTTCAAATAATTTCACAAAAAAACACTTCCATACTGTCC

>Glyma.13g159900.3 sequence-type=transcript locus=Glyma.13g159900 ID=Glyma.13g159900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACCTTCTTGCCTCACGAACTCAGACTCGCCTCTTGCCCTCACCGGCGCGGCCACCAAACGGTGCAACGCCACCAGCGTTTATTCACAGATCACACGGCGGCGACGACCTCCCTTACCAGCGCTTTGTCTCGAAAACGCGCATCTTTGACTCACTTCCTCACAGGCACGGATCGCGCTGCGCCCTCCCTCACCGACGTCAACGTGACCGGCTTCTGGTGGCACATAGCGCACTGCACTCGCACAAAGCCAACACTTCCTTTGAACTCACGCGTTCCTGGTGGAGACCCAAAAGTTCGAAACTGAACATTTTCACAAGCTTTCGGAGGGCGTTGATGAGTTCGGTAGCTATTTTGCTTTCAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAACCAAGATTGAAGATGGACATCTGGGTCGTCGTGGTTACTTTTGCATGGGGAATTCATAATTAATATCCCTGTTTAGATAGTAGGAGGAAATGTGTTCCTTTTCCAGTTATTGCTGCTTTAAACAAGACAATGAAACAAAAAAAAAATGATAAAATGTATTATGCTTCATTTTATTCAACATTTCTATTTTTCTTCTATGTTTATGACCACATATTTCCTTTTCATCCGCACACTTTTTCAAATAATTTCACAAAAAAACACTTCCATACTGTCC

>Glyma.13g159900.4 sequence-type=transcript locus=Glyma.13g159900 ID=Glyma.13g159900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCTTGGGGTATAAAAATCAAAGAAGAAGAACTCATTGGAATGGTTGAGATCAATTGCTAGTGTTCAGATGAGTTCAAATAATGGGATGGTTCACTTAGTCAAGATTGAGCCTCCTCTATCTTCTAGGTTTGGCTCAGTCCCTGGATGTGGTTCTCACGTTGGATCCACGCCACACAATACCACGTTATATTGATTACATCCAGACGAATAAGAAATGGGAGAAGGCATGGTGTTAGCGGCTGACTGACCGCAGATACTCACTCAGTATCAAACTACTGAATCAGTTAGTCTTAGTCAGGTCATGATTTAAAATATTACGTTGGGCTTGGATGAAATCAAGCCCACATCATCTCCCATGTAATAAGCAAGGGATTGGGAAAAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAACCAAGATTGAAGATGGACATCTGGGTCGTCGTGGTTACTTTTGCATGGGGAATTCATAATTAATATCCCTGTTTAGATAGTAGGAGGAAATGTGTTCCTTTTCCAGTTATTGCTGCTTTAAACAAGACAATGAAACAAAAAAAAAATGATAAAATGTATTATGCTTCATTTTATTCAACATTTCTATTTTTCTTCTATGTTTATGACCACATATTTCCTTTTCATCCGCACACTTTTTCAAATAATTTCACAAAAAAACACTTCCATACTGTCC

Coding sequences of Glyma.13g159900

Limit To All Plant Sequences

>Glyma.13g159900.1 sequence-type=CDS polypeptide=Glyma.13g159900.1.p locus=Glyma.13g159900 ID=Glyma.13g159900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATCAAGCCCACATCATCTCCCATGTAATAAGCAAGGGATTGGGAAAAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAA

>Glyma.13g159900.2 sequence-type=CDS polypeptide=Glyma.13g159900.2.p locus=Glyma.13g159900 ID=Glyma.13g159900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAA

>Glyma.13g159900.3 sequence-type=CDS polypeptide=Glyma.13g159900.3.p locus=Glyma.13g159900 ID=Glyma.13g159900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAA

>Glyma.13g159900.4 sequence-type=CDS polypeptide=Glyma.13g159900.4.p locus=Glyma.13g159900 ID=Glyma.13g159900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATCAAGCCCACATCATCTCCCATGTAATAAGCAAGGGATTGGGAAAAGAGTTCTCAGGTGCAAATTAGGGTTCTTAACCATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATCGGTGAATTCACCCAGGATGAGTCAACAACTTTGGCTGAGATAAAAAGAGTATGGCTTTCTAGGAAGTTCTCCTACATTTATGAAGCTCGTCCTTCTGCCAACCTGGCCTTCTTTATGCAATCACTGTATGCTCATTGTATAGGTTACATGGTTGGTACCGCAACTTTATCTCACAGATTAGGTGGCCTTTACTGCCTCTACTGTCTTTATGAGACTCAACCATTTAATCCTTCTTTTAAGGTCTATCTATCCCTTGGAGAATTAAAGAAACTTAGAATCCTTGTTGCTGATGCAAAAGCAAATGATATTAAAGTAGCACTTGCTTTAGTAAAAAGAATGCTTGAAAGAAACACATTCCTTTTTGGCTCTGTTGACTTGATGGAAGGTTGTGTCACAGAGACAGTAAATGAACTCCAACAATTACAGAATGCCCGTATTCAAGTTGCATATGAAAAGTTATTTGATAGCACTTCAATTGACAACTACATCCAGATGGACCTTGGCTTGGAAGTTGACCTTGATTTGCTGAAGAAAAAGTCATCTGGATATGCCACGGCCAAGAATGTGGCTATTCAAGAGGCGAGCAATATTTTAGACGTTGAAAACATAAAGCACTTACAAAAAGATAAGGAACTGATAGGAGATGTTGTGGAGAAGGTTGCTAACGACTGGCACGTTCAGAAACAAACATTTTATAAACAAACAGGATTAGGGGACGATGCATATGAGAAGGAACTGGAGCAATTACTTCTAGAGCAGCATCCACATGATGGAAACTCTTAA

Predicted protein sequences of Glyma.13g159900

Limit To All Plant Sequences

>Glyma.13g159900.1.p sequence-type=predicted peptide transcript=Glyma.13g159900.1 locus=Glyma.13g159900 ID=Glyma.13g159900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKSSPHHLPCNKQGIGKRVLRCKLGFLTMSIDYFKQDIDELIGEFTQDESTTLAEIKRVWLSRKFSYIYEARPSANLAFFMQSLYAHCIGYMVGTATLSHRLGGLYCLYCLYETQPFNPSFKVYLSLGELKKLRILVADAKANDIKVALALVKRMLERNTFLFGSVDLMEGCVTETVNELQQLQNARIQVAYEKLFDSTSIDNYIQMDLGLEVDLDLLKKKSSGYATAKNVAIQEASNILDVENIKHLQKDKELIGDVVEKVANDWHVQKQTFYKQTGLGDDAYEKELEQLLLEQHPHDGNS*

>Glyma.13g159900.2.p sequence-type=predicted peptide transcript=Glyma.13g159900.2 locus=Glyma.13g159900 ID=Glyma.13g159900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSIDYFKQDIDELIGEFTQDESTTLAEIKRVWLSRKFSYIYEARPSANLAFFMQSLYAHCIGYMVGTATLSHRLGGLYCLYCLYETQPFNPSFKVYLSLGELKKLRILVADAKANDIKVALALVKRMLERNTFLFGSVDLMEGCVTETVNELQQLQNARIQVAYEKLFDSTSIDNYIQMDLGLEVDLDLLKKKSSGYATAKNVAIQEASNILDVENIKHLQKDKELIGDVVEKVANDWHVQKQTFYKQTGLGDDAYEKELEQLLLEQHPHDGNS*

>Glyma.13g159900.3.p sequence-type=predicted peptide transcript=Glyma.13g159900.3 locus=Glyma.13g159900 ID=Glyma.13g159900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSIDYFKQDIDELIGEFTQDESTTLAEIKRVWLSRKFSYIYEARPSANLAFFMQSLYAHCIGYMVGTATLSHRLGGLYCLYCLYETQPFNPSFKVYLSLGELKKLRILVADAKANDIKVALALVKRMLERNTFLFGSVDLMEGCVTETVNELQQLQNARIQVAYEKLFDSTSIDNYIQMDLGLEVDLDLLKKKSSGYATAKNVAIQEASNILDVENIKHLQKDKELIGDVVEKVANDWHVQKQTFYKQTGLGDDAYEKELEQLLLEQHPHDGNS*

>Glyma.13g159900.4.p sequence-type=predicted peptide transcript=Glyma.13g159900.4 locus=Glyma.13g159900 ID=Glyma.13g159900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKSSPHHLPCNKQGIGKRVLRCKLGFLTMSIDYFKQDIDELIGEFTQDESTTLAEIKRVWLSRKFSYIYEARPSANLAFFMQSLYAHCIGYMVGTATLSHRLGGLYCLYCLYETQPFNPSFKVYLSLGELKKLRILVADAKANDIKVALALVKRMLERNTFLFGSVDLMEGCVTETVNELQQLQNARIQVAYEKLFDSTSIDNYIQMDLGLEVDLDLLKKKSSGYATAKNVAIQEASNILDVENIKHLQKDKELIGDVVEKVANDWHVQKQTFYKQTGLGDDAYEKELEQLLLEQHPHDGNS*

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