Glyma.13g158700

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Report for Sequence Feature Glyma.13g158700

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27387485
stop:	27392071
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g158700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42160.1	AT	zinc finger (ubiquitin-hydrolase) domain-containing protein	JGI	N/A	IEA
GO:0010029	GO-bp	regulation of seed germination	EnsemblGenomes	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	EnsemblGenomes	N/A	IEA
GO:0000151	GO-cc	ubiquitin ligase complex	EnsemblGenomes	N/A	IEA
GO:0004842	GO-mf	ubiquitin-protein transferase activity	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
KOG0804	KOG	Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein)	JGI	N/A	IEA
PTHR24007	Panther	BRCA1-ASSOCIATED PROTEIN	JGI	N/A	IEA
PTHR24007:SF8	Panther	BRIZ1	JGI	N/A	IEA
PF02148	PFAM	Zn-finger in ubiquitin-hydrolases and other protein	JGI	N/A	IEA
PF07576	PFAM	BRCA1-associated protein 2	JGI	N/A	IEA

Expression Patterns of Glyma.13g158700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g158700 not represented in the dataset	Glyma.13g158700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g158700

Paralog	Evidence	Comments
Glyma.17g112600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g158700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g22710	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g158700

Limit To All Plant Sequences

>Glyma.13g158700.2 sequence-type=transcript locus=Glyma.13g158700 ID=Glyma.13g158700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCTTTGATTAATTTTCATCTCAGAAACAATCTATCAAACACATATTCCGATAAACAGAAACACCACCGTTGAATTTGAGAATCCCGGCGAGGCATGTTCTTGCTCCGAGTCCACTCGGTGGAAGAGGACCACCCTCTGGATCCCCAAACCATCTTccaatcccaatcccaatcccaatcccaatcccaatccAACAACCCTAAATTCAGCGAACGCAGAGGCGCACTCCACTTGTTCCGAACCTCTTCCCATTCCTCGCTCCCAACCCAGACCTCTCTTTCTTCTCTCCTCTTCATCCTCGCCGTCCCCAACTACCTCTCCTTCCACGACTTCATTCCCTTCTGTGGACCCCACCTCGACCGTTTCCACCACCTTCTCTTCATCAGAAACGACGGCACCGAAGATCGCTATAGCGTCCTCATCGAGTTCGCCGATCACTTTGCCGCCGACGCATTTTTTACCAATTTCAATGCCAAGAAGTTTTCTCCTGCCGAGGCAGAGGTGTGCCATATTTTGTTTCTGCAATCCGTGGAGTATTCTGAATATGCAGAAGTTGCTGGGACTCCGCCTCCTGGTTGTACGGAAATACCAACTTGTCCTGTTTGTCTTGAGAGGTTGGACCCAGATACGAGTGGGATTCTCACAACACTTTGCGACCACTCATTTGATTGCCCTTGTGTTTCAAAGTGGACGTACTTGTCTTGCCAGGTTTGTCAATTCTGTCAGCAACAGGATGAGAAGCCAACCTGTTTTATTTGTGGAACATTAGATGATCTCTGGGTTTGTATGATTTGTGGATTTGTTGGATGTGGAAGATATAAAGAAGGACATGCCATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAGTTATGTCCATCGACTGAACCAGGACCAGTCTAAAATTGATGGCAAGTTGGAGGAGATGAATTTTCGCTGTATGTCACTGGAAGGAGATTGTGGTATGTGCGAATGCCGTGAAGATTTGGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGACAATATTATGAATCTTTACTAGTGGAGGCAAAAAGTAAAATGGAAAGTTCCATGTCTGAAGCAGTGGAGAAAGCTGCAGCTTCTGAAATGCAGGATATCCAAAATGAACTGGAAAAGTGTACAGAAGAAAGAAATGCCATTGCTGAGGTCAATCAGAAACTCATAAAAAATCAAGAGATTTGGCGGAAGAAGTTTAAAGAAGCTGAAGAGAGATTAGAGATATCAAGATTTTTCTAGAAGCACAAAAAACAATTGATAAAATGTCAGATTCAAATGGGATCAAGGAGGGAACAGTCCTGCCGGTGGCTTATGAGCAATCTTCTCCAGGCCACAGTAAGAGAAACAAAAAGTCTGGCCGAAGGAGGAATTAGTTGCAACCTCAACCAGAACACAATATTCGAACTTATGGGTAGTCTGCTTTTTAGGAGGGAAGGACACTGCTTCTGATTATTACACTGATACTTGTTGATATATAGAGGCAGTTCCAACTCGTGGCCATGGATTGCTGTCTGCATATTTTAGATGTTGTATAGTTTATTCTTGTAAACAGTTAGTTTAACGAATTTCGTGGTCCTAACCCTTTCCTCTCTGATGCCGTTCGTGGTTACGATGGTAACTAACCAAAAATTAGCAAGTAACAATTTAGCTCCATTGCAATGTCAGAGTCATATTTTCAGTAAATTCTTTATTATTCATTGAAATTCATTAAAATATATTCAC

Coding sequences of Glyma.13g158700

Limit To All Plant Sequences

>Glyma.13g158700.1 sequence-type=CDS polypeptide=Glyma.13g158700.1.p locus=Glyma.13g158700 ID=Glyma.13g158700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTTGCTCCGAGTCCACTCGGTGGAAGAGGACCACCCTCTGGATCCCCAAACCATCTTCCAATCCCAATCCCAATCCCAATCCCAATCCCAATCCAACAACCCTAAATTCAGCGAACGCAGAGGCGCACTCCACTTGTTCCGAACCTCTTCCCATTCCTCGCTCCCAACCCAGACCTCTCTTTCTTCTCTCCTCTTCATCCTCGCCGTCCCCAACTACCTCTCCTTCCACGACTTCATTCCCTTCTGTGGACCCCACCTCGACCGTTTCCACCACCTTCTCTTCATCAGAAACGACGGCACCGAAGATCGCTATAGCGTCCTCATCGAGTTCGCCGATCACTTTGCCGCCGACGCATTTTTTACCAATTTCAATGCCAAGAAGTTTTCTCCTGCCGAGGCAGAGGTGTGCCATATTTTGTTTCTGCAATCCGTGGAGTATTCTGAATATGCAGAAGTTGCTGGGACTCCGCCTCCTGGTTGTACGGAAATACCAACTTGTCCTGTTTGTCTTGAGAGGTTGGACCCAGATACGAGTGGGATTCTCACAACACTTTGCGACCACTCATTTGATTGCCCTTGTGTTTCAAAGTGGACGTACTTGTCTTGCCAGGTTTGTCAATTCTGTCAGCAACAGGATGAGAAGCCAACCTGTTTTATTTGTGGAACATTAGATGATCTCTGGGTTTGTATGATTTGTGGATTTGTTGGATGTGGAAGATATAAAGAAGGACATGCCATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAGTTATGTCCATCGACTGAACCAGGACCAGTCTAAAATTGATGGCAAGTTGGAGGAGATGAATTTTCGCTGTATGTCACTGGAAGGAGATTGTGGTATGTGCGAATGCCGTGAAGATTTGGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGACAATATTATGAATCTTTACTAGTGGAGGCAAAAAGTAAAATGGAAAGTTCCATGTCTGAAGCAGTGGAGAAAGCTGCAGCTTCTGAAATGCAGGATATCCAAAATGAACTGGAAAAGTGTACAGAAGAAAGAAATGCCATTGCTGAGGTCAATCAGAAACTCATAAAAAATCAAGAGATTTGGCGGAAGAAGTTTAAAGAAGCTGAAGAGAGGGAAGCTAAATCAATTAAATTGATGAATGAGAGGATAATTGATTTGGAGGAACAGATTAGAGATATCAAGATTTTTCTAGAAGCACAAAAAACAATTGATAAAATGTCAGATTCAAATGGGATCAAGGAGGGAACAGTCCTGCCGGTGGCTTATGAGCAATCTTCTCCAGGCCACAGTAAGAGAAACAAAAAGTCTGGCCGAAGGAGGAATTAG

>Glyma.13g158700.2 sequence-type=CDS polypeptide=Glyma.13g158700.2.p locus=Glyma.13g158700 ID=Glyma.13g158700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTTGCTCCGAGTCCACTCGGTGGAAGAGGACCACCCTCTGGATCCCCAAACCATCTTCCAATCCCAATCCCAATCCCAATCCCAATCCCAATCCAACAACCCTAAATTCAGCGAACGCAGAGGCGCACTCCACTTGTTCCGAACCTCTTCCCATTCCTCGCTCCCAACCCAGACCTCTCTTTCTTCTCTCCTCTTCATCCTCGCCGTCCCCAACTACCTCTCCTTCCACGACTTCATTCCCTTCTGTGGACCCCACCTCGACCGTTTCCACCACCTTCTCTTCATCAGAAACGACGGCACCGAAGATCGCTATAGCGTCCTCATCGAGTTCGCCGATCACTTTGCCGCCGACGCATTTTTTACCAATTTCAATGCCAAGAAGTTTTCTCCTGCCGAGGCAGAGGTGTGCCATATTTTGTTTCTGCAATCCGTGGAGTATTCTGAATATGCAGAAGTTGCTGGGACTCCGCCTCCTGGTTGTACGGAAATACCAACTTGTCCTGTTTGTCTTGAGAGGTTGGACCCAGATACGAGTGGGATTCTCACAACACTTTGCGACCACTCATTTGATTGCCCTTGTGTTTCAAAGTGGACGTACTTGTCTTGCCAGGTTTGTCAATTCTGTCAGCAACAGGATGAGAAGCCAACCTGTTTTATTTGTGGAACATTAGATGATCTCTGGGTTTGTATGATTTGTGGATTTGTTGGATGTGGAAGATATAAAGAAGGACATGCCATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAGTTATGTCCATCGACTGAACCAGGACCAGTCTAAAATTGATGGCAAGTTGGAGGAGATGAATTTTCGCTGTATGTCACTGGAAGGAGATTGTGGTATGTGCGAATGCCGTGAAGATTTGGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGACAATATTATGAATCTTTACTAGTGGAGGCAAAAAGTAAAATGGAAAGTTCCATGTCTGAAGCAGTGGAGAAAGCTGCAGCTTCTGAAATGCAGGATATCCAAAATGAACTGGAAAAGTGTACAGAAGAAAGAAATGCCATTGCTGAGGTCAATCAGAAACTCATAAAAAATCAAGAGATTTGGCGGAAGAAGTTTAAAGAAGCTGAAGAGAGATTAGAGATATCAAGATTTTTCTAG

Predicted protein sequences of Glyma.13g158700

Limit To All Plant Sequences

>Glyma.13g158700.1.p sequence-type=predicted peptide transcript=Glyma.13g158700.1 locus=Glyma.13g158700 ID=Glyma.13g158700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFLLRVHSVEEDHPLDPQTIFQSQSQSQSQSQSNNPKFSERRGALHLFRTSSHSSLPTQTSLSSLLFILAVPNYLSFHDFIPFCGPHLDRFHHLLFIRNDGTEDRYSVLIEFADHFAADAFFTNFNAKKFSPAEAEVCHILFLQSVEYSEYAEVAGTPPPGCTEIPTCPVCLERLDPDTSGILTTLCDHSFDCPCVSKWTYLSCQVCQFCQQQDEKPTCFICGTLDDLWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFKTQQIWDYVGDSYVHRLNQDQSKIDGKLEEMNFRCMSLEGDCGMCECREDLGINGALFNSKVETIVDEYNRLLTSQLETQRQYYESLLVEAKSKMESSMSEAVEKAAASEMQDIQNELEKCTEERNAIAEVNQKLIKNQEIWRKKFKEAEEREAKSIKLMNERIIDLEEQIRDIKIFLEAQKTIDKMSDSNGIKEGTVLPVAYEQSSPGHSKRNKKSGRRRN*

>Glyma.13g158700.2.p sequence-type=predicted peptide transcript=Glyma.13g158700.2 locus=Glyma.13g158700 ID=Glyma.13g158700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFLLRVHSVEEDHPLDPQTIFQSQSQSQSQSQSNNPKFSERRGALHLFRTSSHSSLPTQTSLSSLLFILAVPNYLSFHDFIPFCGPHLDRFHHLLFIRNDGTEDRYSVLIEFADHFAADAFFTNFNAKKFSPAEAEVCHILFLQSVEYSEYAEVAGTPPPGCTEIPTCPVCLERLDPDTSGILTTLCDHSFDCPCVSKWTYLSCQVCQFCQQQDEKPTCFICGTLDDLWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFKTQQIWDYVGDSYVHRLNQDQSKIDGKLEEMNFRCMSLEGDCGMCECREDLGINGALFNSKVETIVDEYNRLLTSQLETQRQYYESLLVEAKSKMESSMSEAVEKAAASEMQDIQNELEKCTEERNAIAEVNQKLIKNQEIWRKKFKEAEERLEISRFF*

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