SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54540.1 | AT | general control non-repressible 4 | JGI | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016887 | GO-mf | ATPase activity | EnsemblGenomes | N/A | IEA |
| GO:0016887 | GO-mf | ATPase activity | JGI | N/A | IEA |
| KOG0066 | KOG | eIF2-interacting protein ABC50 (ABC superfamily) | JGI | N/A | IEA |
| PTHR19211 | Panther | ATP-BINDING TRANSPORT PROTEIN-RELATED | JGI | N/A | IEA |
| PTHR19211:SF14 | Panther | ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 1 | JGI | N/A | IEA |
| PF00005 | PFAM | ABC transporter | JGI | N/A | IEA |
| GN7V-66317 | SoyCyc9-rxn | ATPase | Plant Metabolic Network | ISS |
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Glyma.13g158600 not represented in the dataset |
Glyma.13g158600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g112700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g22700 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g158600.1 sequence-type=CDS polypeptide=Glyma.13g158600.1.p locus=Glyma.13g158600 ID=Glyma.13g158600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCTAAGGTCAAGGCTAGTAGCAAAGATCCTGCTAAGAAGGAAAAAATTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTCTCTTCTTCCTCCAGTAAGCCGAAGCCCAAATCTGCTCCAAAAGCTTCCACATACACCGATGGTATTGATCTTCCTCCATCCGATGATGAAGATGATGATCTCTTGGAAGAGGAGGAAGCCAAAAGGTCCAGTCAGCAGCAGCAAAGGCCTGGTTTGAAGCCACTTGATGTGCCTATTGCTGAGAAGGAGTTGAAAAAGCGTGAAAAGAAGGATCTTTTAGCAGCACATGTTGCTGAGCAGGCAAAGAAGGAGGCTCTCAAGGATGATCACGATGCTTTCACTGTGGTCATTGGAAGCCGGGCTTCGGTGCTTGATGGAGGAGATGATGCTGATGCTAATGTCAAAGATATAACAGTAGAAAATTTCTCCGTGTCTGCACGGGGTAAAGAACTTCTGAAAAATGCAACGGTGAAGATATCTCATGGAAAGAGGTATGGTTTGGTTGGGCCCAACGGAAAGGGCAAGTCCACGCTGTTGAAGCTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATTGATGTCCTTCTGGTTGAACAGGAGGTAGTTGGTGATGATAAAACAGCTCTTGAAGCTGTTGTTTCTGCTAATGACGAACTTGTTAAAATTCGACAAGAAGTTGCCTCTCTGCAGAATGCAGCTTCTGTTGAAGACAAAGATAATGATGAGGAAGACGATACAGGAGAGAAGCTAGCAGAGCTATATGAAAAACTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAAGCATCAAAGATATTAGCTGGTTTAGGTTTTACAAAGGATATGCAAGCCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTCTGGTGGTTGTCTCACATGATAGGGATTTTCTCAACACAGTGTGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGCGGGTATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGATATTTATGCCAAGCAATTGCAAGCGGCTAAGAGGAGTGGAAACCAGGCTCAGCAAAAAAAAGTTAAGGATCAAGCTAAGTTTGCAGCAGCTAAGGAAAAAAGCAAGGGCAAGGGCAAGGGCAAGGTTGATGAGGATGAGGCCCCACCAGAGGCACCTCAGAAGTGGAGGGATTACAGTGTGGAGTTTCACTTTCCTGAACCTACTGAGCTCACACCCCCACTTCTGCAGCTTATTGAAGTCAGCTTTAGCTACCCAAACCGGGAAGATTTCAGGCTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACGTTGTTGAATCTTCTAGCTGGTGATTTGGTTCCTTCTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCAGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCTATCTCCATGTCAAATCCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCCGATGCACTGGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCACGTGTATGTGAGGATGAAGAAAGGAGTCAAATCTGGGTTGTCGAAGATGGTACTGTCAAAAATTTCCCAGGAACATTTGAGGATTACAAGGACGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTGA
>Glyma.13g158600.1.p sequence-type=predicted peptide transcript=Glyma.13g158600.1 locus=Glyma.13g158600 ID=Glyma.13g158600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGRKKTEDAGPSAKVKASSKDPAKKEKISVSAMLASMDEKPDKPKKVSSSSSKPKPKSAPKASTYTDGIDLPPSDDEDDDLLEEEEAKRSSQQQQRPGLKPLDVPIAEKELKKREKKDLLAAHVAEQAKKEALKDDHDAFTVVIGSRASVLDGGDDADANVKDITVENFSVSARGKELLKNATVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVASLQNAASVEDKDNDEEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQARPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYDIYAKQLQAAKRSGNQAQQKKVKDQAKFAAAKEKSKGKGKGKVDEDEAPPEAPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSNPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVKNFPGTFEDYKDDLLREIKAEVDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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