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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09880.1 | AT | Protein phosphatase 2A regulatory B subunit family protein | JGI | N/A | IEA |
| GO:0007165 | GO-bp | signal transduction | EnsemblGenomes | N/A | IEA |
| GO:0007165 | GO-bp | signal transduction | JGI | N/A | IEA |
| GO:0043666 | GO-bp | regulation of phosphoprotein phosphatase activity | EnsemblGenomes | N/A | IEA |
| GO:0050790 | GO-bp | regulation of catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0000159 | GO-cc | protein phosphatase type 2A complex | EnsemblGenomes | N/A | IEA |
| GO:0000159 | GO-cc | protein phosphatase type 2A complex | JGI | N/A | IEA |
| GO:0005488 | GO-mf | binding | EnsemblGenomes | N/A | IEA |
| GO:0019888 | GO-mf | protein phosphatase regulator activity | EnsemblGenomes | N/A | IEA |
| KOG2085 | KOG | Serine/threonine protein phosphatase 2A, regulatory subunit | JGI | N/A | IEA |
| PTHR10257 | Panther | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B | JGI | N/A | IEA |
| PF01603 | PFAM | Protein phosphatase 2A regulatory B subunit (B56 family) | JGI | N/A | IEA |
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Glyma.13g145700 not represented in the dataset |
Glyma.13g145700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g058900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g20870 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g145700.1 sequence-type=CDS polypeptide=Glyma.13g145700.1.p locus=Glyma.13g145700 ID=Glyma.13g145700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTCAAGAAAATCATGAAAGGCGGGCACAAGAAGCCCTCCAAGTCCGACGCCAGTGATCCGGCTCCGCAGCCGTACGCCGCCGCCAACTTCAGCGCTCCGGCGGCGCCCTCCGCCAATGTCGTCGTGAATTTCGTCTCCTTGACCCCCCTCACGCTCTCCTCCGGCGGCTCCGTCGAGCCGGTGCCTCCGTTCCGCGACGCGCCCGTCGCGGAACGGCAGAACCTCTTCCTCCGGAAGCTCCACGTGTGCTGCTACATCCTCGACTTCTCCGACACGCTGAAGAACGTTAGGGAGAAAGAAATCAAGCGCCAGGCGCTCATGGACCTCGTGGACTTCATCCAATCCGGCTCCGGCAAGATAAGCGAGAACTGCCAAGAAGAGATGATCAGAATGATCTCCGTCAACATTTTTCGGTGCCTCCCGCCGGCGTCGCACGAAAACACAGGCCAAGAACCCACCGATCCCGAAGAGGAGGAACCTTCCTTGGACCCTTCTTGGCCCCACCTTCAGCTCGTCTACGAGCTTCTCCTCAGATACGTGGTTTCCTCCGACACCGATACGAAAATCGCGAAACGGTACATCGACCACTCCTTTGTTCTCAAGTTGCTCGATTTGTTTGACTCTGAGGACCCACGGGAGAGGGAGTATTTGAAAACCATACTGCATCGTATATACGGGAAATTCATGGTGCATAGGCCCTTTATTAGGAAAGCTATTAACAACATTTTTTACCGCTTTATATATGAGACTGAGAGGCACTCTGGTATTGGGGAGCTTCTGGAGATTCTGGGCAGCATTATTAATGGGTTTGCCTTGCCCATGAAGGAGGAGCACAAGCTGTTTCTTGTGAGGGCGCTTCTGCCTCTGCATAAGCCGAAATCGGTGGGGATGTACCATCAGCAGTTGTCTTACTGCATTACTCAGTTTGTGGAGAAGGATTTCAAGCTCGCCGATACCGTGATTAGGGGTTTGTTGAAGTATTGGCCGGTTACCAATTGCCAGAAGGAGGTTCTCTTCCTTGGAGAACTTGAGGAGGTGCTGGAGGCCACGCAAGCCGCGGAGTTTCAACGATGCATGATTCCGCTTTTTAGACAGATTTCACGCTGCCTCAATAGCTCTCACTTTCAGGTTGCAGAACGAGCCCTCTTCTTGTGGAATAACGAGCATATTGTGAGCTTAATTGCCCAAAACAGGACTGTGATACTACCAATAATATTTCAAGCATTTGAGAAAAATATTTCGAGTCACTGGAATCAGGCGGTGCACGGACTGACCATGAATGTTCGCAAAATGTTCCTGGAAATGGACGCAGAATTGTTTGAAGAGTGCCAGCGGAAGCACGCAGAGAAAGAGGCTAAAGCCAAAGAACTAGCAGAGCAGCGGGAACTTAATTGGAAGAGACTGGCAGACGCGGCTGCACAGAATGGAGTGGAGGACATGGTCACTTAG
>Glyma.13g145700.1.p sequence-type=predicted peptide transcript=Glyma.13g145700.1 locus=Glyma.13g145700 ID=Glyma.13g145700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MFKKIMKGGHKKPSKSDASDPAPQPYAAANFSAPAAPSANVVVNFVSLTPLTLSSGGSVEPVPPFRDAPVAERQNLFLRKLHVCCYILDFSDTLKNVREKEIKRQALMDLVDFIQSGSGKISENCQEEMIRMISVNIFRCLPPASHENTGQEPTDPEEEEPSLDPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKSVGMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMIPLFRQISRCLNSSHFQVAERALFLWNNEHIVSLIAQNRTVILPIIFQAFEKNISSHWNQAVHGLTMNVRKMFLEMDAELFEECQRKHAEKEAKAKELAEQRELNWKRLADAAAQNGVEDMVT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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