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Report for Sequence Feature Glyma.13g144900

Feature Type:gene_model
Chromosome:Gm13
Start:25748784
stop:25753764
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g144900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03290.1AT isocitrate dehydrogenase V JGI N/AIEA
GO:0006099GO-bp tricarboxylic acid cycle EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0004449GO-mf isocitrate dehydrogenase (NAD+) activity EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
KOG0785 KOG Isocitrate dehydrogenase, alpha subunit JGI N/AIEA
PTHR11835Panther DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE JGI N/AIEA
PTHR11835:SF5Panther JGI N/AIEA
PF00180PFAM Isocitrate/isopropylmalate dehydrogenase JGI N/AIEA
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PWY-5690SoyCyc9 TCA cycle II (plants and fungi) Plant Metabolic Network ISS
PWY-6549SoyCyc9 L-glutamine biosynthesis III Plant Metabolic Network ISS
GN7V-50461SoyCyc9-rxn isocitrate dehydrogenase (NAD+) Plant Metabolic Network ISS

Expression Patterns of Glyma.13g144900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g144900
ParalogEvidenceComments
Glyma.10g058100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g144900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g20790 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g144900
>Glyma.13g144900.1 sequence-type=CDS polypeptide=Glyma.13g144900.1.p locus=Glyma.13g144900 ID=Glyma.13g144900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTCAGCTCCTGAGACGAACCTTCGGAAGTCGCATCCTTGCAAACCCTAGGGCCTTCTCCTTCTCCTCCGCTGCTTCCACTCCGATCCGCGCCACTCTCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGAATCCGTCAAACAGATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAACTGAAATTGACCCTAGAACCCAAAGTTTTCTGACATGGGAAAGTTTGGAATCTGTAAGGCAAAATGGGGTTGGCTTGAAAGGACCAATGGCCACCCCTATTGGAAAAGGGCATCGTTCATTAAATCTTACTCTGAGAAAAGAGCTCAATTTGTATGCCAATGTTCGACCTTGCTACAGTCTTCCAGGCTACAAAACTCGGTATGATAATGTCAATCTAATCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGGTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTTTAAGGGTAGCTGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAGAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCCATTTGAACCTCCATGACAAAGCAGAACAGATTCAAAAAGCCATCCTGAACACAATTGCAGAAGGGAAGTACCGAACAGCTGACCTCGGTGGCAGTTCAAAGACAACTGAATTCACAAAGGCAATTATTGATCATCTTTAG
Predicted protein sequences of Glyma.13g144900
>Glyma.13g144900.1.p sequence-type=predicted peptide transcript=Glyma.13g144900.1 locus=Glyma.13g144900 ID=Glyma.13g144900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASQLLRRTFGSRILANPRAFSFSSAASTPIRATLFPGDGIGPEIAESVKQIFQAADVPIEWEEHYVGTEIDPRTQSFLTWESLESVRQNGVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDNVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSGVTMLRHLNLHDKAEQIQKAILNTIAEGKYRTADLGGSSKTTEFTKAIIDHL*






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