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Report for Sequence Feature Glyma.13g143500

Feature Type:gene_model
Chromosome:Gm13
Start:25621902
stop:25626963
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g143500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03345.1AT JGI N/AIEA
GO:0098655GO-bp cation transmembrane transport EnsemblGenomesN/AIEA
GO:0005769GO-cc early endosome EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0072546GO-cc ER membrane protein complex EnsemblGenomesN/AIEA
GO:0022890GO-mf inorganic cation transmembrane transporter activity EnsemblGenomesN/AIEA
PTHR21181Panther FAMILY NOT NAMED JGI N/AIEA
PTHR21181:SF6Panther JGI N/AIEA
PF10270PFAM Membrane magnesium transporter JGI N/AIEA

Expression Patterns of Glyma.13g143500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g143500
ParalogEvidenceComments
Glyma.10g057000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g143500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g20670 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g143500
>Glyma.13g143500.1 sequence-type=CDS polypeptide=Glyma.13g143500.1.p locus=Glyma.13g143500 ID=Glyma.13g143500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTTAGGTTTTGTTGTCGGATTCCTCGGGCTTCTCATTCTATTTCATGCCGCATATTCCACCATCCAATACAGGGGTTTGTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCTTTGAATGTGGTGATTGAGGTGACTCTAGGGTTAGTTCTTTGCATGTGGGCTGCACTAACCGTGCCAGGGAAATTTTTGTCCATCCACCCTCACTCTGAAGAGAACAGGATTGTTTCTTTACCTTCCAACCTGGACTTCATGATCTTCAACCATCGATACAAAGTCTTTCCTGTGGAAATGGATGTGAAGCTGAAGCATTGA
Predicted protein sequences of Glyma.13g143500
>Glyma.13g143500.1.p sequence-type=predicted peptide transcript=Glyma.13g143500.1 locus=Glyma.13g143500 ID=Glyma.13g143500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLGFVVGFLGLLILFHAAYSTIQYRGLLKITEEEFSGPPLNVVIEVTLGLVLCMWAALTVPGKFLSIHPHSEENRIVSLPSNLDFMIFNHRYKVFPVEMDVKLKH*






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