Glyma.13g137800

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Report for Sequence Feature Glyma.13g137800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	25048422
stop:	25053352
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g137800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03080.1	AT	Phosphatidic acid phosphatase (PAP2) family protein	JGI	N/A	IEA
GO:0006487	GO-bp	protein N-linked glycosylation	EnsemblGenomes	N/A	IEA
GO:0006651	GO-bp	diacylglycerol biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	JGI	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0030176	GO-cc	integral component of endoplasmic reticulum membrane	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0047874	GO-mf	dolichyldiphosphatase activity	EnsemblGenomes	N/A	IEA
KOG3146	KOG	Dolichyl pyrophosphate phosphatase and related acid phosphatases	JGI	N/A	IEA
PTHR11247	Panther	PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1	JGI	N/A	IEA
PTHR11247:SF14	Panther		JGI	N/A	IEA
PF01569	PFAM	PAP2 superfamily	JGI	N/A	IEA
TRIGLSYN-PWY	SoyCyc9	diacylglycerol and triacylglycerol biosynthesis	Plant Metabolic Network		ISS
GN7V-67736	SoyCyc9-rxn	phosphatidate phosphatase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.13g137800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g137800 not represented in the dataset	Glyma.13g137800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g137800

Paralog	Evidence	Comments
Glyma.10g050300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g137800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g20100	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g137800

Limit To All Plant Sequences

>Glyma.13g137800.2 sequence-type=transcript locus=Glyma.13g137800 ID=Glyma.13g137800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATGAGCTTTATATAGCTTCATCACAACTCAAGCTTTCTATTAGGTTGACATTGTAGGTCCAATAGAAAAAGTTTATTAAATTTTTTGAGGCCTTGAAAAATCATCAATGCTTCCAGATGTAACGTAGCAACGGGGGAGAGAAGATCTGTTTCACTTTTCACACCAAACCCCGATCTGAGATCTTCTCTTGCCCTCCCACAACAATGACATCCCCGACGGCGCTGAAGGCCGTGACGCTGACGCACGTGCGCTACCAGAGGGGCGACCGCGTCGGCCACTTCCTGGCCTGGATATCCCTTGTCCCCGTCTTCATCTCCCTGGGCGGCTTCGTCTCTCACTTCATCTTCCGCCGCGAACTCCAGGGCATATTCTTCGCCCTCGGCCTCATCGTCTCCCAATTCATCAACGAAGTCATCAAGACCTCCGTCCAGCAGGCCCGCCCCGCCACCTGCGCCCTCCTTGAGATGTGCGACTCCCACGGCTGGCCCTCCAGCCACTGCCAGTACATGTTCTTCTTCGCCTCCTACCTCACCCTCCTCTCCCTCAGAGGCGGCCTCTCTTTCTGGCACGTGCGCGACAACCCCCCCCTCCACCTCCTCACGTGGTCCCTCGCGCTGCTCACCATGTATTCCCGCGTCTACTTGGGGTACCATACGCTGGCTCAGGTTTTCGCTGGGACCGCGCTTGGGGTTTTCCTCGGCGCGGTTTGGTTCTGGGTTGTGAACTCCGTTTTGTATCCGTACTTTCCGGTTATTGAAGAGAGCGCGTTTGGGAGGTGGTTCTACGTGAAGGACACTTCTCATATACCTAATGTGTTGAAGTTTGAGTACGATATGGCCAGGGCTGAGAGACGGAAACTGGCATCGAATTCTAAGTCGGATTGAGTTGTAGGCTTTGAAAAGCTCAAGTTTTGTTGTGAACACATAGTTGCAGGATAATGAAATATTTGAGGCACATTGCTCTGAATTTTTCTTCTAGGATTTGCCTTCACAAGTATTTATGGCAGTATTATTATAGCTTTCTTCTCTGGAGCTTTCCACTATAGAAGCCATCTGGCTTGGCTCAGCCGTTCAGGTATAAATGGTATCTATGAAGAGGGCAGCAGAGCACACTGATATGGTACTACGGGTCTATGATGCCTGTGAAATAGAACTAATGTAACAATAGATGGTTTTACTTGATGTTATAGATAGACAAATGAATAGTTTGTCTTGTTTTCTTACATGGGTTTTTGACCACATACATTGACACAAATAAAACTGAGGGTTTTTTTAAATTATTGATAAATTTATAAATATTT

Coding sequences of Glyma.13g137800

Limit To All Plant Sequences

>Glyma.13g137800.1 sequence-type=CDS polypeptide=Glyma.13g137800.1.p locus=Glyma.13g137800 ID=Glyma.13g137800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACATCCCCGACGGCGCTGAAGGCCGTGACGCTGACGCACGTGCGCTACCAGAGGGGCGACCGCGTCGGCCACTTCCTGGCCTGGATATCCCTTGTCCCCGTCTTCATCTCCCTGGGCGGCTTCGTCTCTCACTTCATCTTCCGCCGCGAACTCCAGGGCATATTCTTCGCCCTCGGCCTCATCGTCTCCCAATTCATCAACGAAGTCATCAAGACCTCCGTCCAGCAGGCCCGCCCCGCCACCTGCGCCCTCCTTGAGATGTGCGACTCCCACGGCTGGCCCTCCAGCCACTGCCAGTACATGTTCTTCTTCGCCTCCTACCTCACCCTCCTCTCCCTCAGAGGCGGCCTCTCTTTCTGGCACGTGCGCGACAACCCCCCCCTCCACCTCCTCACGTGGTCCCTCGCGCTGCTCACCATGTATTCCCGCGTCTACTTGGGGTACCATACGCTGGCTCAGGTTTTCGCTGGGACCGCGCTTGGGGTTTTCCTCGGCGCGGTTTGGTTCTGGGTTGTGAACTCCGTTTTGTATCCGTACTTTCCGGTTATTGAAGAGAGCGCGTTTGGGAGGTGGTTCTACGTGAAGGACACTTCTCATATACCTAATGTGTTGAAGTTTGAGTACGATATGGCCAGGGCTGAGAGACGGAAACTGGCATCGAATTCTAAGTCGGATTGA

>Glyma.13g137800.2 sequence-type=CDS polypeptide=Glyma.13g137800.2.p locus=Glyma.13g137800 ID=Glyma.13g137800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACATCCCCGACGGCGCTGAAGGCCGTGACGCTGACGCACGTGCGCTACCAGAGGGGCGACCGCGTCGGCCACTTCCTGGCCTGGATATCCCTTGTCCCCGTCTTCATCTCCCTGGGCGGCTTCGTCTCTCACTTCATCTTCCGCCGCGAACTCCAGGGCATATTCTTCGCCCTCGGCCTCATCGTCTCCCAATTCATCAACGAAGTCATCAAGACCTCCGTCCAGCAGGCCCGCCCCGCCACCTGCGCCCTCCTTGAGATGTGCGACTCCCACGGCTGGCCCTCCAGCCACTGCCAGTACATGTTCTTCTTCGCCTCCTACCTCACCCTCCTCTCCCTCAGAGGCGGCCTCTCTTTCTGGCACGTGCGCGACAACCCCCCCCTCCACCTCCTCACGTGGTCCCTCGCGCTGCTCACCATGTATTCCCGCGTCTACTTGGGGTACCATACGCTGGCTCAGGTTTTCGCTGGGACCGCGCTTGGGGTTTTCCTCGGCGCGGTTTGGTTCTGGGTTGTGAACTCCGTTTTGTATCCGTACTTTCCGGTTATTGAAGAGAGCGCGTTTGGGAGGTGGTTCTACGTGAAGGACACTTCTCATATACCTAATGTGTTGAAGTTTGAGTACGATATGGCCAGGGCTGAGAGACGGAAACTGGCATCGAATTCTAAGTCGGATTGA

Predicted protein sequences of Glyma.13g137800

Limit To All Plant Sequences

>Glyma.13g137800.1.p sequence-type=predicted peptide transcript=Glyma.13g137800.1 locus=Glyma.13g137800 ID=Glyma.13g137800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSPTALKAVTLTHVRYQRGDRVGHFLAWISLVPVFISLGGFVSHFIFRRELQGIFFALGLIVSQFINEVIKTSVQQARPATCALLEMCDSHGWPSSHCQYMFFFASYLTLLSLRGGLSFWHVRDNPPLHLLTWSLALLTMYSRVYLGYHTLAQVFAGTALGVFLGAVWFWVVNSVLYPYFPVIEESAFGRWFYVKDTSHIPNVLKFEYDMARAERRKLASNSKSD*

>Glyma.13g137800.2.p sequence-type=predicted peptide transcript=Glyma.13g137800.2 locus=Glyma.13g137800 ID=Glyma.13g137800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSPTALKAVTLTHVRYQRGDRVGHFLAWISLVPVFISLGGFVSHFIFRRELQGIFFALGLIVSQFINEVIKTSVQQARPATCALLEMCDSHGWPSSHCQYMFFFASYLTLLSLRGGLSFWHVRDNPPLHLLTWSLALLTMYSRVYLGYHTLAQVFAGTALGVFLGAVWFWVVNSVLYPYFPVIEESAFGRWFYVKDTSHIPNVLKFEYDMARAERRKLASNSKSD*

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