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Report for Sequence Feature Glyma.13g137100

Feature Type:gene_model
Chromosome:Gm13
Start:24972814
stop:24974683
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g137100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02960.1AT Ribosomal protein S12/S23 family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0015935GO-cc small ribosomal subunit EnsemblGenomesN/AIEA
GO:0022627GO-cc cytosolic small ribosomal subunit EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG1749 KOG 40S ribosomal protein S23 JGI N/AIEA
PTHR11652Panther 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER JGI N/AIEA
PTHR11652:SF2Panther JGI N/AIEA
PF00164PFAM Ribosomal protein S12/S23 JGI N/AIEA

Expression Patterns of Glyma.13g137100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g137100
ParalogEvidenceComments
Glyma.10g049400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g137100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g20010 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g137100
>Glyma.13g137100.2 sequence-type=transcript locus=Glyma.13g137100 ID=Glyma.13g137100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTACATTGGCCCAGTAGCGCTGAACAGACCCAGTAGTGTTTTGGTTTTTGTCCACTATATAAACCCCCAACTTCGGTTATCGATTAGGGTTTTGCGCTGTTGTTGCTGCTCATCCTCCGTAACCTCCGAGCTCTGCACCGAAGAACGAAGCCATGGGGTAACCTAACAATTCTCCATTACTCTTTCGATATGCTTCACTGCATGTTTATGTTCCTTTTATGTTTTATTTGCTTTGTTCCCAAAAATTGAACGCACACGAAGGAACTTGAGCTCGTGAATTTATATATGCTTCTGGTAGATCTGTTTCTCATCAAATAATCTCATCGATTCTTCCCGTGTGAAAACTTTATATTTTCTACAATGGGATTATGTATATTTATCGGTGTAGTGTTTATGTTGGTTTTCCCCCCGTTTTGTGCAATGTGATTTGCTTCTTCAATGGTTTTTGTTTAATTTTATTTGGTCGATGATCTAAAGCTTCCTTGTAAATATCGATTATTTCATTGATTTGTTATTTGATGTTAGTTATAGGGTCAATGGAATTGAGTTCCTTTGTCTTGTTTTTGAGGGGTGTGGGAGAAGGGGCAAATTGCTTGTGACAATTTCAAAAAAATGAAAATAAAATGGAGTGAACATTTAACTAGGTTTTTTAGTGATGTCCTTCTAGACTTGGTATGGTCAATGAATGGAAGAACATTTAATTAGGTTTTATAGTTATCTGGTCTAATTCAATTGGGGGAACTAGGAATTGGTTGATGAATAAAAGAACATAGAATGCATGAAATTAGAATTTGTTGCTGTCTTACAGGAAGACACATGGAATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTCGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAAATTTGTGGAGTACTTGTGTTTGTTTTCAATAGTTTCTCTCAAGTATTATGAATTTTGTTTTTAGGTGAACGGGTTTTATGAACAATTTTCTATCTTTTCTAGTTATTTTACTGAACTTCATTTAACATTTCAAGTAACATATCTCGGCTTGCCTCGCCTATGCTTCTTCCCCTTTCTCTGGCTTCTTGCGATTGTTTTTTTCATTCTCTTGCTGTAAACTTTCACGGAATATATAGCCATTGAAGGTTTAGCAATTGCTTCTGTTAATGAATCGATCAACCGGGAGATGGTAGCAGTAGGAGCTAGCTGTTAGATATCTGATCCTATTTTCAATTCTCTAGTTATTCTCTAGATATGTGATCCTATTATACTCGTGCAAGTTGTGAAAAAATAGGATGATTTTTTTTTC

>Glyma.13g137100.3 sequence-type=transcript locus=Glyma.13g137100 ID=Glyma.13g137100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTACATTGGCCCAGTAGCGCTGAACAGACCCAGTAGTGTTTTGGTTTTTGTCCACTATATAAACCCCCAACTTCGGTTATCGATTAGGGTTTTGCGCTGTTGTTGCTGCTCATCCTCCGTAACCTCCGAGCTCTGCACCGAAGAACGAAGCCATGGGGAAGACACATGGAATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGTGAGTGCTTGTCCATGTTTGCTAGCTTCATTATTTTTTATACTCCTGGAAATAACTTGAGTTTCTTTGATAAATTGTTATTTGTATCCATTGTGTAACTTGGGGTGTGGCCCATGGTTGTTTAGGACGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTCGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAAATTTGTGGAGTACTTGTGTTTGTTTTCAATAGTTTCTCTCAAGTATTATGAATTTTGTTTTTAGGTGAACGGGTTTTATGAACAATTTTCTATCTTTTCTAGTTATTTTACTGAACTTCATTTAACATTTCAAGTAACATATCTCGGCTTGCCTCGCCTATGCTTCTTCCCCTTTCTCTGGCTTCTTGCGATTGTTTTTTTCATTCTCTTGCTGTAAACTTTCACGGAATATATAGCCATTGAAGGTTTAGCAATTGCTTCTGTTAATGAATCGATCAACCGGGAGATGGTAGCAGTAGGAGCTAGCTGTTAGATATCTGATCCTATTTTCAATTCTCTAGTTATTCTCTAGATATGTGATCCTATTATACTCGTGCAAGTTGTGAAAAAATAGGATGATTTTTTTTTC
Coding sequences of Glyma.13g137100
>Glyma.13g137100.1 sequence-type=CDS polypeptide=Glyma.13g137100.1.p locus=Glyma.13g137100 ID=Glyma.13g137100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAGACACATGGAATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTCGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA

>Glyma.13g137100.2 sequence-type=CDS polypeptide=Glyma.13g137100.2.p locus=Glyma.13g137100 ID=Glyma.13g137100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTCGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA

>Glyma.13g137100.3 sequence-type=CDS polypeptide=Glyma.13g137100.3.p locus=Glyma.13g137100 ID=Glyma.13g137100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAGACACATGGAATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGTGAGTGCTTGTCCATGTTTGCTAGCTTCATTATTTTTTATACTCCTGGAAATAACTTGA
Predicted protein sequences of Glyma.13g137100
>Glyma.13g137100.1.p sequence-type=predicted peptide transcript=Glyma.13g137100.1 locus=Glyma.13g137100 ID=Glyma.13g137100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKTHGMGSARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*

>Glyma.13g137100.2.p sequence-type=predicted peptide transcript=Glyma.13g137100.2 locus=Glyma.13g137100 ID=Glyma.13g137100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*

>Glyma.13g137100.3.p sequence-type=predicted peptide transcript=Glyma.13g137100.3 locus=Glyma.13g137100 ID=Glyma.13g137100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKTHGMGSARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENVSACPCLLASLFFILLEIT*






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