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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G02820.1 | AT | Spo11/DNA topoisomerase VI, subunit A protein | JGI | N/A | IEA |
| GO:0000737 | GO-bp | DNA catabolic process, endonucleolytic | EnsemblGenomes | N/A | IEA |
| GO:0006259 | GO-bp | DNA metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006259 | GO-bp | DNA metabolic process | JGI | N/A | IEA |
| GO:0006265 | GO-bp | DNA topological change | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005694 | GO-cc | chromosome | EnsemblGenomes | N/A | IEA |
| GO:0005694 | GO-cc | chromosome | JGI | N/A | IEA |
| GO:0009330 | GO-cc | DNA topoisomerase complex (ATP-hydrolyzing) | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0003916 | GO-mf | DNA topoisomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003918 | GO-mf | DNA topoisomerase type II (ATP-hydrolyzing) activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016853 | GO-mf | isomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0061505 | GO-mf | DNA topoisomerase II activity | EnsemblGenomes | N/A | IEA |
| KOG2795 | KOG | Catalytic subunit of the meiotic double strand break transesterase | JGI | N/A | IEA |
| PTHR10848 | Panther | MEIOTIC RECOMBINATION PROTEIN SPO11 | JGI | N/A | IEA |
| PF04406 | PFAM | Type IIB DNA topoisomerase | JGI | N/A | IEA |
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Glyma.13g136100 not represented in the dataset |
Glyma.13g136100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g048300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g19890 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g136100.1 sequence-type=CDS polypeptide=Glyma.13g136100.1.p locus=Glyma.13g136100 ID=Glyma.13g136100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGACAACAAAAAACGCCGGCGCAAGGACCCCGCCGGCGACGAGCTACCCTTCAAGAACAAGCTGAAACCCGACTCAGCAATCATGGAAACCCTAAAGCAGTTCTCCGCCTCCTCCTCCTCCTCCTCCGTCTCCCAAACCCTAACCCTCCAGGACCTCTCCATCCCCTTCCGGTGCCGCGAGGTGGCAGACCTCTCCCTCTCCTCCGTGCAGTCCAACATCGAGTCCCTCATCCTCAGGATCGCCCACTCCATCCTCTCCGGCCACGGCTTCTCTTTCGACGTCCCTTCCCGCTCCGCCGCCAACCAGCTCTACGTGCCCGAGCTCGACCGCATCGTCCTCAAGGACAAATCCTCCCTTCGCCCGTTTGCGAACATCTCCACTGTGCGGAAATCCGCCATCACCGCCCGCATCCTGCAGCTCATCCACCAGCTCTGCATCAAGGGCATCCATGTCACCAAGCGTGACCTCTTCTACACCGACGTCAAACTCTTCCAGGACCAGATCCAATCTGATGCTGTTCTGGATGATGTGTCCTGCATGCTGGGGTGCACTCGGTCCAGCCTCAATGTCGTTGCTGCGGAGAAAGGGGTGGTGGTTGGGAGGTTGATTTTCAGTGACAATGGGGATATGATCGATTGCACCAAAATGGGGATGGGAGGGAAGGCAATTCCGCCAAATATTGATCGAGTTGGGGATATGCAGAGTGATGCTTTGTTTATTTTGTTGGTGGAGAAGGATGCTGCTTATATGAGGTTGGCTGAGGATAGGTTCTACAACCGTTTTCCATGCATAATTGTGACTGCAAAGGGGCAGCCAGATGTTTCCACTAGGCTGTTCTTGAGGAAGATGAAGACAGAGTTGAAGCTGCCGGTGCTGGCTCTAGTTGACAGTGATCCTTATGGGTTGAAGATTCTGTCGGTTTATGGCTGTGGGTCCAAGAACATGTCTTATGACAGTGCTAACTTAACCACCCCTGATATCAAGTGGCTTGGGGTTAGGCCTAGTGATTTGGACAAGTACAAGATACCTGAGCAGTGTAGGTTGCCGATGACCGAGCAGGATATTAAGACTGGTAAGGACTTGCTGGAGGAGGATTTTGTCAAGAAGAACCCTGGTTGGGTGGAGGAATTGACCTTGATGGTCAAGACTAAGCAAAAGGCTGAAATACAGGCTTTGAGCACTTTTGGTTTTCAGTATCTGTCAGAAGTTTATTTGCCCTTGAAGTTGCAGCAGAAAGATTGGCTTTGA
>Glyma.13g136100.1.p sequence-type=predicted peptide transcript=Glyma.13g136100.1 locus=Glyma.13g136100 ID=Glyma.13g136100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MADNKKRRRKDPAGDELPFKNKLKPDSAIMETLKQFSASSSSSSVSQTLTLQDLSIPFRCREVADLSLSSVQSNIESLILRIAHSILSGHGFSFDVPSRSAANQLYVPELDRIVLKDKSSLRPFANISTVRKSAITARILQLIHQLCIKGIHVTKRDLFYTDVKLFQDQIQSDAVLDDVSCMLGCTRSSLNVVAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVSTRLFLRKMKTELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSTFGFQYLSEVYLPLKLQQKDWL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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