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Report for Sequence Feature Glyma.13g131900

Feature Type:gene_model
Chromosome:Gm13
Start:24444431
stop:24451275
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g131900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37500.1AT arginine biosynthesis protein ArgJ family JGI N/AIEA
GO:0006526GO-bp arginine biosynthetic process EnsemblGenomesN/AIEA
GO:0006526GO-bp arginine biosynthetic process JGI N/AIEA
GO:0006592GO-bp ornithine biosynthetic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004042GO-mf acetyl-CoA:L-glutamate N-acetyltransferase activity EnsemblGenomesN/AIEA
GO:0004358GO-mf glutamate N-acetyltransferase activity EnsemblGenomesN/AIEA
GO:0004358GO-mf glutamate N-acetyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
GO:0103045GO-mf methione N-acyltransferase activity EnsemblGenomesN/AIEA
KOG2786 KOG Putative glutamate/ornithine acetyltransferase JGI N/AIEA
PTHR23100Panther ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ JGI N/AIEA
PF01960PFAM ArgJ family JGI N/AIEA
ARGSYN-PWYSoyCyc9 L-arginine biosynthesis I (via L-ornithine) Plant Metabolic Network ISS
ARGSYNBSUB-PWYSoyCyc9 L-arginine biosynthesis II (acetyl cycle) Plant Metabolic Network ISS
GLUTORN-PWYSoyCyc9 L-ornithine biosynthesis I Plant Metabolic Network ISS
GN7V-55969SoyCyc9-rxn glutamate N-acetyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g131900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g131900
ParalogEvidenceComments
Glyma.10g044300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g131900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g19450 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g131900
>Glyma.13g131900.2 sequence-type=transcript locus=Glyma.13g131900 ID=Glyma.13g131900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAATTTGTCCGCCTTGTTCTCGGTGTTTAACTGTGTCCCTGGGTGGAAGAATCTGCGCAGCTGCCAAAACGTTACTACATTTGAGAGAAGTAACGCCGAAACTCCAGCAACATAGTAGAGTATTTATTAGCTACACACGGAGTTCACTAACCTTCCCCGCTTCTGATCAAAATCAAACTGCGAAAACCCTAAAACCCTAGTACATTACATTTGAGAAAGAAAAAAAAAATGTATTCGTGTATTCCTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGAACCAGATTCCAGGTGGAGTTACTGCTGCCGAGGGATTCAAAGCTGCGGGAATGTACGGAGGTTTACGTGCCAAAGGAGAAAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACTGCACGTGCTGTGTTAACTAATGCAGGTCAAGCAAATGCAGCGACGGGCAAAGAAGGTTACCAGGACATGATAGAATGTGTGGAAAGCCTTGCTAAGCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAGGGGGCACTTTTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAACCGAAGTTTCAACCAGATAACTGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTCAACTTCAGGCATGCCTAGATGCGGTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGGGAAGGAGCAACATGCCTCGTTGAGGTCTGTGTGACTGGTGCAAATAGTGAGGCTGAAGCTGCAAAAGTTGCGCGTTCAGTTGCATCATCTTCACTTGTAAAGGCTGCTATATATGGTAGAGACCCCAATTGGGGACGCATTGCTGCTGCAGCTGGTTACTCGGGGGTTTCATTCCATCAAGATTTACTTAGGGTAGAGCTGGGGGATATTTTACTAATGGATGGCGGGGAACCACAATTATTTGACCGGTAGGATTTCTGTTTTTGGTTATTTTACTTGCATTTGCAAATTAGTAAAAAAAGAAAAAAATATTTTCTGACATTTTATCTACATTCAAGCCTTGAAACCAACCAATTACCTTTTTTCTCCAATACCAGTTAGTAAATGGACAAAATCTGATGCTGTGGAAGAGTATCACTTTCCATTTCTATTGCATGAAGGAAACTGTTTACTTAT

>Glyma.13g131900.3 sequence-type=transcript locus=Glyma.13g131900 ID=Glyma.13g131900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAATTTGTCCGCCTTGTTCTCGGTGTTTAACTGTGTCCCTGGGTGGAAGAATCTGCGCAGCTGCCAAAACGTTACTACATTTGAGAGAAGTAACGCCGAAACTCCAGCAACATAGTAGAGTATTTATTAGCTACACACGGAGTTCACTAACCTTCCCCGCTTCTGATCAAAATCAAACTGCGAAAACCCTAAAACCCTAGTACATTACATTTGAGAAAGAAAAAAAAAATGTATTCGTGTATTCCTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGAACCAGATTCCAGGTGGAGTTACTGCTGCCGAGGGATTCAAAGCTGCGGGAATGTACGGAGGTTTACGTGCCAAAGGAGAAAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACTGCACGTGCTGTGTTAACTAATGCAGGTCAAGCAAATGCAGCGACGGGCAAAGAAGGTTACCAGGACATGATAGAATGTGTGGAAAGCCTTGCTAAGCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAGGGGGCACTTTTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAACCGAAGTTTCAACCAGATAACTGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTCAACTTCAGGCATGCCTAGATGCGGTAAAGTTGACCTTGTACCATACTACAATTTCATCACTATTTTGTCATCTCATATTTTCATTCTTTTCCTTTGAACAAACTAATATATTGATGTACTTAAACTCTTGCTCCCTTGCTGGAAGCTTCACCTTTCTAGTAAAACTGGCAAATGAATTACTATGACTGTTTTGCTGGAAGTAGTATCATAGTCCATTTGGAATCAGATATTCAGTAATATGCAGGGGGGGTGTAAGCATAACACCCATTTCTTTTTCTGGTAAATGATGTTGTAACCCCCCTGCTCCCATTCATTTCAAGAAAAAAGGCCTGCAAAAATGCCTGAAACTCCTTTTTGTCATCCTTTATTCCAACCTCCTTCAGATGTAAGCATAATTTATTCTTCAAAAGTGCCCAGTCAGAAAATGTGAAGTTTTGAGTTGATTGTTCTTTCCAGGTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGGGAAGGAGCAACATGCCTCGTTGAGGTATTTTTTTGTGTCAAGGATAAGGATATTTGCATCATGACTGTTGATTTATGTGACTGTTGTTTTATATTCCAATATTAATCCTCCACAGTCCTTGTGCATGAATCATGATTGAAACTTTCTTTACTCTTTTAACAAAACAAGTGATAGTTTTCATCCTGCCTTGTTTTCGAAGAACCTCATCAATTCAAATATTTGTTAATTAATGAATAAAAATGCAGGGTTTGAGTGATaaataaaatcaaaataaatttaaataatataTCCCCCATTGTTTCTCCACTTTCTTATATTTTTCCTCCATCCTTATCACCACTGCCTTTTCTGTTATAACTGATTTTCTTGTCTCATTTT
Coding sequences of Glyma.13g131900
>Glyma.13g131900.1 sequence-type=CDS polypeptide=Glyma.13g131900.1.p locus=Glyma.13g131900 ID=Glyma.13g131900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCGTGTATTCCTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGAACCAGATTCCAGGTGGAGTTACTGCTGCCGAGGGATTCAAAGCTGCGGGAATGTACGGAGGTTTACGTGCCAAAGGAGAAAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACTGCACGTGCTGTGTTAACTAATGCAGGTCAAGCAAATGCAGCGACGGGCAAAGAAGGTTACCAGGACATGATAGAATGTGTGGAAAGCCTTGCTAAGCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAGGGGGCACTTTTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAACCGAAGTTTCAACCAGATAACTGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTCAACTTCAGGCATGCCTAGATGCGGTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGGGAAGGAGCAACATGCCTCGTTGAGGTCTGTGTGACTGGTGCAAATAGTGAGGCTGAAGCTGCAAAAGTTGCGCGTTCAGTTGCATCATCTTCACTTGTAAAGGCTGCTATATATGGTAGAGACCCCAATTGGGGACGCATTGCTGCTGCAGCTGGTTACTCGGGGGTTTCATTCCATCAAGATTTACTTAGGGTAGAGCTGGGGGATATTTTACTAATGGATGGCGGGGAACCACAATTATTTGACCGGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGTTAAAATTCAGATATCAGTTGGCAATGGACCAGGACGTGGACAAGCATGGGGATGTGATTTAAGCTACGATTATGTTAAAATAAATGCTGAGTACACAACATAG

>Glyma.13g131900.2 sequence-type=CDS polypeptide=Glyma.13g131900.2.p locus=Glyma.13g131900 ID=Glyma.13g131900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCGTGTATTCCTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGAACCAGATTCCAGGTGGAGTTACTGCTGCCGAGGGATTCAAAGCTGCGGGAATGTACGGAGGTTTACGTGCCAAAGGAGAAAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACTGCACGTGCTGTGTTAACTAATGCAGGTCAAGCAAATGCAGCGACGGGCAAAGAAGGTTACCAGGACATGATAGAATGTGTGGAAAGCCTTGCTAAGCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAGGGGGCACTTTTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAACCGAAGTTTCAACCAGATAACTGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTCAACTTCAGGCATGCCTAGATGCGGTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGGGAAGGAGCAACATGCCTCGTTGAGGTCTGTGTGACTGGTGCAAATAGTGAGGCTGAAGCTGCAAAAGTTGCGCGTTCAGTTGCATCATCTTCACTTGTAAAGGCTGCTATATATGGTAGAGACCCCAATTGGGGACGCATTGCTGCTGCAGCTGGTTACTCGGGGGTTTCATTCCATCAAGATTTACTTAGGGTAGAGCTGGGGGATATTTTACTAATGGATGGCGGGGAACCACAATTATTTGACCGGTAG

>Glyma.13g131900.3 sequence-type=CDS polypeptide=Glyma.13g131900.3.p locus=Glyma.13g131900 ID=Glyma.13g131900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCGTGTATTCCTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGAACCAGATTCCAGGTGGAGTTACTGCTGCCGAGGGATTCAAAGCTGCGGGAATGTACGGAGGTTTACGTGCCAAAGGAGAAAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACTGCACGTGCTGTGTTAACTAATGCAGGTCAAGCAAATGCAGCGACGGGCAAAGAAGGTTACCAGGACATGATAGAATGTGTGGAAAGCCTTGCTAAGCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAGGGGGCACTTTTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAACCGAAGTTTCAACCAGATAACTGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTCAACTTCAGGCATGCCTAGATGCGGTAAAGTTGACCTTGTACCATACTACAATTTCATCACTATTTTGTCATCTCATATTTTCATTCTTTTCCTTTGAACAAACTAATATATTGATGTACTTAAACTCTTGCTCCCTTGCTGGAAGCTTCACCTTTCTAGTAAAACTGGCAAATGAATTACTATGA
Predicted protein sequences of Glyma.13g131900
>Glyma.13g131900.1.p sequence-type=predicted peptide transcript=Glyma.13g131900.1 locus=Glyma.13g131900 ID=Glyma.13g131900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSCIPQHLFLHLHLASSPNPKAFNSPLRNLRIRAVSTKENHIPAAPIFLPEGPWNQIPGGVTAAEGFKAAGMYGGLRAKGEKPDLALVTCDVDAVSAGSFTTNVVAAAPVLYCKRTLDISNTARAVLTNAGQANAATGKEGYQDMIECVESLAKLLKVKPEEVLIESTGVIGQRIKKGALLNSLPTLVNSLSSSVEGADSAAVAITTTDLVSKSVAIESLIGGTKVRVGGMAKGSGMIHPNMATMLGVITTDARLTSDVWRKMVQVAVNRSFNQITVDGDTSTNDTVIALASGLSGLGCISSLDSDEAIQLQACLDAVMQGLAKSIAWDGEGATCLVEVCVTGANSEAEAAKVARSVASSSLVKAAIYGRDPNWGRIAAAAGYSGVSFHQDLLRVELGDILLMDGGEPQLFDRHAASSYLRKAGETHDTVKIQISVGNGPGRGQAWGCDLSYDYVKINAEYTT*

>Glyma.13g131900.2.p sequence-type=predicted peptide transcript=Glyma.13g131900.2 locus=Glyma.13g131900 ID=Glyma.13g131900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSCIPQHLFLHLHLASSPNPKAFNSPLRNLRIRAVSTKENHIPAAPIFLPEGPWNQIPGGVTAAEGFKAAGMYGGLRAKGEKPDLALVTCDVDAVSAGSFTTNVVAAAPVLYCKRTLDISNTARAVLTNAGQANAATGKEGYQDMIECVESLAKLLKVKPEEVLIESTGVIGQRIKKGALLNSLPTLVNSLSSSVEGADSAAVAITTTDLVSKSVAIESLIGGTKVRVGGMAKGSGMIHPNMATMLGVITTDARLTSDVWRKMVQVAVNRSFNQITVDGDTSTNDTVIALASGLSGLGCISSLDSDEAIQLQACLDAVMQGLAKSIAWDGEGATCLVEVCVTGANSEAEAAKVARSVASSSLVKAAIYGRDPNWGRIAAAAGYSGVSFHQDLLRVELGDILLMDGGEPQLFDR*

>Glyma.13g131900.3.p sequence-type=predicted peptide transcript=Glyma.13g131900.3 locus=Glyma.13g131900 ID=Glyma.13g131900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSCIPQHLFLHLHLASSPNPKAFNSPLRNLRIRAVSTKENHIPAAPIFLPEGPWNQIPGGVTAAEGFKAAGMYGGLRAKGEKPDLALVTCDVDAVSAGSFTTNVVAAAPVLYCKRTLDISNTARAVLTNAGQANAATGKEGYQDMIECVESLAKLLKVKPEEVLIESTGVIGQRIKKGALLNSLPTLVNSLSSSVEGADSAAVAITTTDLVSKSVAIESLIGGTKVRVGGMAKGSGMIHPNMATMLGVITTDARLTSDVWRKMVQVAVNRSFNQITVDGDTSTNDTVIALASGLSGLGCISSLDSDEAIQLQACLDAVKLTLYHTTISSLFCHLIFSFFSFEQTNILMYLNSCSLAGSFTFLVKLANELL*






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