Glyma.13g128600

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Report for Sequence Feature Glyma.13g128600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	24140803
stop:	24142802
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g128600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74340.1	AT	dolichol phosphate-mannose biosynthesis regulatory protein-related	JGI	N/A	IEA
GO:0006506	GO-bp	GPI anchor biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009059	GO-bp	macromolecule biosynthetic process	JGI	N/A	IEA
GO:0019348	GO-bp	dolichol metabolic process	EnsemblGenomes	N/A	IEA
GO:0035269	GO-bp	protein O-linked mannosylation	EnsemblGenomes	N/A	IEA
GO:0050790	GO-bp	regulation of catalytic activity	EnsemblGenomes	N/A	IEA
GO:0005789	GO-cc	endoplasmic reticulum membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0030176	GO-cc	integral component of endoplasmic reticulum membrane	EnsemblGenomes	N/A	IEA
GO:0030176	GO-cc	integral component of endoplasmic reticulum membrane	JGI	N/A	IEA
GO:0033185	GO-cc	dolichol-phosphate-mannose synthase complex	EnsemblGenomes	N/A	IEA
GO:0004582	GO-mf	dolichyl-phosphate beta-D-mannosyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0030234	GO-mf	enzyme regulator activity	EnsemblGenomes	N/A	IEA
KOG3488	KOG	Dolichol phosphate-mannose regulatory protein (DPM2)	JGI	N/A	IEA
PTHR15039	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR15039:SF7	Panther		JGI	N/A	IEA
PF07297	PFAM	Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)	JGI	N/A	IEA
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS	SoyCyc9	protein N-glycosylation initial phase (eukaryotic)	Plant Metabolic Network		ISS
GN7V-67582	SoyCyc9-rxn	dolichol phosphate mannose synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.13g128600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g128600 not represented in the dataset	Glyma.13g128600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g128600

Paralog	Evidence	Comments
Glyma.10g041600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g128600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g19070	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g128600

Limit To All Plant Sequences

>Glyma.13g128600.2 sequence-type=transcript locus=Glyma.13g128600 ID=Glyma.13g128600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATAACCTCTAATCCTGCTTCCAAAAAGAAAACCTCTAATCCTATCCGTATATGAAGATCCAAGGGCCCAAAATAAACTGGTTGGAGAGGGCTGGAGGCGCGGCTGCAGTAGAGGATCCGCGTCCAGTGTTTGGTGGTTGTGATGTGAATTTGAGAACCTCCAGTGTTCAGCAACCCTAAATTTGGGCCTCAAGGATCTTGGTGTTTGCAGAGTTGGGCAGGCAGGGTCAGAAGAGCTTGTACCCACAGGCTTCTCGATTTGGTGTGTAAAACAGTGAAGAACACCACAGAATTCAATTATAAGGAAGTGAGAACATAAGCATTAAGCATCAAAATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGCGCACAAGTACTTCTTACCCCAAGAGTATGCCATTATGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAACGGCTAACACTGTCCATTTGTTGCACAATTTGTTCTAATTTTTGAAATAGTGAATTTATTGAATGCATTTTCGATCATTTCATTCCAATTATTAGTAATCACCTTTTTTTTTTGTCTATGCGTGGAACTACATGGATGAGATAAGTGA

>Glyma.13g128600.3 sequence-type=transcript locus=Glyma.13g128600 ID=Glyma.13g128600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATAACCTCTAATCCTGCTTCCAAAAAGAAAACCTCTAATCCTATCCGTATATGAAGATCCAAGGGCCCAAAATAAACTGGTTGGAGAGGGCTGGAGGCGCGGCTGCAGTAGAGGATCCGCGTCCAGTGTTTGGTGGTTGTGATGTGAATTTGAGAACCTCCAGTGTTCAGCAACCCTAAATTTGGGCCTCAAGGATCTTGGTGTTTGCAGAGTTGGGCAGGCAGGGTCAGAAGAGGAAGTGAGAACATAAGCATTAAGCATCAAAATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGCGCACAAGTACTTCTTACCCCAAGAGTATGCCATTATGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAACGGCTAACACTGTCCATTTGTTGCACAATTTGTTCTAATTTTTGAAATAGTGAATTTATTGAATGCATTTTCGATCATTTCATTCCAATTATTAGTAATCACCTTTTTTTTTTGTCTATGCGTGGAACTACATGGATGAGATAAGTGA

>Glyma.13g128600.4 sequence-type=transcript locus=Glyma.13g128600 ID=Glyma.13g128600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGGAGAGGGCTGGAGGCGCGGCTGCAGTAGAGGATCCGCGTCCAGTGTTTGGTGGTTGTGATGTGAATTTGAGAACCTCCAGTGTTCAGCAACCCTAAATTTGGGCCTCAAGGATCTTGGTGTTTGCAGAGTTGGGCAGGCAGGGTCAGAAGAGGCTTCTCGATTTGGTGTGTAAAACAGTGAAGAACACCACAGAATTCAATTATAAGGAAGTGAGAACATAAGCATTAAGCATCAAAATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGCGCACAAGTACTTCTTACCCCAAGAGTATGCCATTATGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAACGGCTAACACTGTCCATTTGTTGCACAATTTGTTCTAATTTTTGAAATAGTGAATTTATTGAATGCATTTTCGATCATTTCATTCCAATTATTAGTAATCACCTTTTTTTTTTGTCTATGCGTGGAACTACATGGATGAGATAAGT

Coding sequences of Glyma.13g128600

Limit To All Plant Sequences

>Glyma.13g128600.1 sequence-type=CDS polypeptide=Glyma.13g128600.1.p locus=Glyma.13g128600 ID=Glyma.13g128600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGCGCACAAGTACTTCTTACCCCAAGAGTATGCCATTATGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAA

>Glyma.13g128600.2 sequence-type=CDS polypeptide=Glyma.13g128600.2.p locus=Glyma.13g128600 ID=Glyma.13g128600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGCGCACAAGTACTTCTTACCCCAAGAGTATGCCATTATGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAA

>Glyma.13g128600.3 sequence-type=CDS polypeptide=Glyma.13g128600.3.p locus=Glyma.13g128600 ID=Glyma.13g128600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGCGCACAAGTACTTCTTACCCCAAGAGTATGCCATTATGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAA

>Glyma.13g128600.4 sequence-type=CDS polypeptide=Glyma.13g128600.4.p locus=Glyma.13g128600 ID=Glyma.13g128600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGCGCACAAGTACTTCTTACCCCAAGAGTATGCCATTATGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAA

Predicted protein sequences of Glyma.13g128600

Limit To All Plant Sequences

>Glyma.13g128600.1.p sequence-type=predicted peptide transcript=Glyma.13g128600.1 locus=Glyma.13g128600 ID=Glyma.13g128600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELADRAVGFLLSFISLSIFTYYTFWVIILPFVDDDHFAHKYFLPQEYAIMIPVSAGVALLCLLCIFIGFVMLKSKKKKA*

>Glyma.13g128600.2.p sequence-type=predicted peptide transcript=Glyma.13g128600.2 locus=Glyma.13g128600 ID=Glyma.13g128600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELADRAVGFLLSFISLSIFTYYTFWVIILPFVDDDHFAHKYFLPQEYAIMIPVSAGVALLCLLCIFIGFVMLKSKKKKA*

>Glyma.13g128600.3.p sequence-type=predicted peptide transcript=Glyma.13g128600.3 locus=Glyma.13g128600 ID=Glyma.13g128600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELADRAVGFLLSFISLSIFTYYTFWVIILPFVDDDHFAHKYFLPQEYAIMIPVSAGVALLCLLCIFIGFVMLKSKKKKA*

>Glyma.13g128600.4.p sequence-type=predicted peptide transcript=Glyma.13g128600.4 locus=Glyma.13g128600 ID=Glyma.13g128600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELADRAVGFLLSFISLSIFTYYTFWVIILPFVDDDHFAHKYFLPQEYAIMIPVSAGVALLCLLCIFIGFVMLKSKKKKA*

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