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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20360.1 | AT | NAD(P)-binding Rossmann-fold superfamily protein | JGI | N/A | IEA |
| GO:0006694 | GO-bp | steroid biosynthetic process | JGI | N/A | IEA |
| GO:0044237 | GO-bp | cellular metabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:1901006 | GO-bp | ubiquinone-6 biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0003854 | GO-mf | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | JGI | N/A | IEA |
| GO:0003954 | GO-mf | NADH dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0050662 | GO-mf | coenzyme binding | JGI | N/A | IEA |
| KOG2865 | KOG | NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit | JGI | N/A | IEA |
| PTHR12126 | Panther | NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED | JGI | N/A | IEA |
| PTHR12126:SF1 | Panther | NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 9, MITOCHONDRIAL | JGI | N/A | IEA |
| PF05368 | PFAM | NmrA-like family | JGI | N/A | IEA |
| PWY-3781 | SoyCyc9 | aerobic respiration I (cytochrome c) | Plant Metabolic Network | ISS | |
| PWY-4302 | SoyCyc9 | aerobic respiration III (alternative oxidase pathway) | Plant Metabolic Network | ISS | |
| PWY-5083 | SoyCyc9 | NAD/NADH phosphorylation and dephosphorylation | Plant Metabolic Network | ISS | |
| GN7V-62106 | SoyCyc9-rxn | NADH:ubiquinone reductase (H+-translocating) | Plant Metabolic Network | ISS |
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Glyma.13g127400 not represented in the dataset |
Glyma.13g127400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g18950 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g127400.2 sequence-type=transcript locus=Glyma.13g127400 ID=Glyma.13g127400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 GTCCCAATTGCATTTGTGTTGAGTTTCTTCTTCTGTTGCGTTGTGTGTGAGTGTGGGCACGGTAAGATGCAGACCATTGCTAGGCGCTTAGGGCAGCAATCGCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGTTGTCCAACAACTTGCTAAAATGGGATCTCAAGTCCTAGTTCCTTTCCGAGGCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGATGGCTAAGGCCAATGTTGTTATCAACCTTATTGGAAGGGATTATGAGACAAGAAACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAGGTGCATCTCCTTCATCTCCATCTAGGATGCTCAGAACTAAATCAGCTGCTGAGGAAATGATTTTAAGGGAACTACCTGAGGCCACAATCTTGAAACCTGCTGTAATGATTGGTACAGAGGATCGGATTTTGAATCCATGGGCTCATTTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAAGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCAGAGATCTTTACTGTGCATGAATTGGCAGACGTTATGTTTGATACAATTCGAGAATGGCCTCGATATGTGAAGGTGCCTTTCCCCATTGCAAAGGCATTGGCAACACCAAGAGAAATATTACTAAACAAGGTCCCCTTTCCACTACCTGTTCCTGAGATATTAAATCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACCCTATTGAGTTTCTTATCTCATATAGGAAAGGAGGCCCACAATTTGGTTCTACTATCAGTGAAAGGGTCACTCCAGATTCTTGGCCGTAAGATTCTTTGGATGTTTGATCCTGAATCATTTTTCTGTCTTGCTTGTACTACCACCATTTAATTTCACTATTTAAAAAAATCTGAAATGCTTTTATATCTTCCTTTCATAATCTGTAGAATATGTGATCATGGTTGATGATGATAATAAAATCCAGATACTTGTTGATTTCCGAACGTAGACGTCTTTGGATCAAATTCAATGTCATTCTATACGATATAAAAAAATGACACATTTCCAATGATGTGTTCTCTTT
>Glyma.13g127400.1 sequence-type=CDS polypeptide=Glyma.13g127400.1.p locus=Glyma.13g127400 ID=Glyma.13g127400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAGACCATTGCTAGGCGCTTAGGGCAGCAATCGCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGTTGTCCAACAACTTGCTAAAATGGGATCTCAAGTCCTAGTTCCTTTCCGAGGCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGATGGCTAAGGCCAATGTTGTTATCAACCTTATTGGAAGGGATTATGAGACAAGAAACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAGGTGCATCTCCTTCATCTCCATCTAGGATGCTCAGAACTAAATCAGCTGCTGAGGAAATGATTTTAAGGGAACTACCTGAGGCCACAATCTTGAAACCTGCTGTAATGATTGGTACAGAGGATCGGATTTTGAATCCATGGGCTCATTTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAAGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCAGAGATCTTTACTGTGCATGAATTGGCAGACGTTATGTTTGATACAATTCGAGAATGGCCTCGATATGTGAAGGTGCCTTTCCCCATTGCAAAGGCATTGGCAACACCAAGAGAAATATTACTAAACAAGGTCCCCTTTCCACTACCTGTTCCTGAGATATTAAATCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGGTAAGTTTCTTTATTTGATCATAAGGTCATTTTTTTTCTCGAGACATTATAGAACTGTGTCTCTTATGTCCCACATTTTTTGTTTGATGAAATTTGCAGCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACCCTATTGAGTTTCTTATCTCATATAGGAAAGGAGGCCCACAATTTGGTTCTACTATCAGTGAAAGGGTCACTCCAGATTCTTGGCCGTAA >Glyma.13g127400.2 sequence-type=CDS polypeptide=Glyma.13g127400.2.p locus=Glyma.13g127400 ID=Glyma.13g127400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAGACCATTGCTAGGCGCTTAGGGCAGCAATCGCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGTTGTCCAACAACTTGCTAAAATGGGATCTCAAGTCCTAGTTCCTTTCCGAGGCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGATGGCTAAGGCCAATGTTGTTATCAACCTTATTGGAAGGGATTATGAGACAAGAAACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAGGTGCATCTCCTTCATCTCCATCTAGGATGCTCAGAACTAAATCAGCTGCTGAGGAAATGATTTTAAGGGAACTACCTGAGGCCACAATCTTGAAACCTGCTGTAATGATTGGTACAGAGGATCGGATTTTGAATCCATGGGCTCATTTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAAGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCAGAGATCTTTACTGTGCATGAATTGGCAGACGTTATGTTTGATACAATTCGAGAATGGCCTCGATATGTGAAGGTGCCTTTCCCCATTGCAAAGGCATTGGCAACACCAAGAGAAATATTACTAAACAAGGTCCCCTTTCCACTACCTGTTCCTGAGATATTAAATCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACCCTATTGAGTTTCTTATCTCATATAGGAAAGGAGGCCCACAATTTGGTTCTACTATCAGTGAAAGGGTCACTCCAGATTCTTGGCCGTAA
>Glyma.13g127400.1.p sequence-type=predicted peptide transcript=Glyma.13g127400.1 locus=Glyma.13g127400 ID=Glyma.13g127400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQTIARRLGQQSLRPSTSLKSIYPISDHHYGMDHERYVSTLATKGVGHLVRKGTGGRSSVSGIIATVFGATGFLGRYVVQQLAKMGSQVLVPFRGSEDNPRHLKLMGDLGQIVPMKYNPRDESSVKAVMAKANVVINLIGRDYETRNYSFEEVHYHMAEQLAKISKEHGGILRFIQVSCLGASPSSPSRMLRTKSAAEEMILRELPEATILKPAVMIGTEDRILNPWAHFAKKYGFLPLFGDGSTKIQPVYVIDVAAALTSLLKDDGTSMGKIYELGGPEIFTVHELADVMFDTIREWPRYVKVPFPIAKALATPREILLNKVPFPLPVPEILNLDKIQALTTDTVVSENGKFLYLIIRSFFFSRHYRTVSLMSHIFCLMKFAALTFNDLGIVPHKLKGYPIEFLISYRKGGPQFGSTISERVTPDSWP* >Glyma.13g127400.2.p sequence-type=predicted peptide transcript=Glyma.13g127400.2 locus=Glyma.13g127400 ID=Glyma.13g127400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQTIARRLGQQSLRPSTSLKSIYPISDHHYGMDHERYVSTLATKGVGHLVRKGTGGRSSVSGIIATVFGATGFLGRYVVQQLAKMGSQVLVPFRGSEDNPRHLKLMGDLGQIVPMKYNPRDESSVKAVMAKANVVINLIGRDYETRNYSFEEVHYHMAEQLAKISKEHGGILRFIQVSCLGASPSSPSRMLRTKSAAEEMILRELPEATILKPAVMIGTEDRILNPWAHFAKKYGFLPLFGDGSTKIQPVYVIDVAAALTSLLKDDGTSMGKIYELGGPEIFTVHELADVMFDTIREWPRYVKVPFPIAKALATPREILLNKVPFPLPVPEILNLDKIQALTTDTVVSENALTFNDLGIVPHKLKGYPIEFLISYRKGGPQFGSTISERVTPDSWP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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